DY260375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 333.569 bits (854), Expect = 5.085e-91 Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD + LRLFCIGFTKR PNQVKRTCYAQ SQIRQI RKM EIM QA+SCDLK LV KFI E+IGKEIEKATSSI+PLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224 HSP 2 Score: 23.8682 bits (50), Expect = 5.085e-91 Identity = 15/30 (50.00%), Postives = 17/30 (56.67%), Query Frame = 3 Query: 738 GKLREVPRQLPPKMLGEKGDRPTE-EAHAG 824 GKL EV + +G K DRP E EA AG Sbjct: 226 GKLMEVHGDYAKEDIGTKLDRPAEDEAMAG 255
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 334.724 bits (857), Expect = 6.660e-91 Identity = 164/197 (83.25%), Postives = 180/197 (91.37%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGM+ TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+ NQVKRTCYAQ+SQI+QI RKMREIMV QA +CDLK LV+KFI E IG+EIEKATSSIYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 6.660e-91 Identity = 165/197 (83.76%), Postives = 182/197 (92.39%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL +E++A+RKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCIGFTKR NQVKRTCYAQ+SQIRQI RKMREIMV QA SCDLK LV KFI EMIGKEIEKATSSIYPLQNVF+RKVK LK+P F+ Sbjct: 28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFD 224
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 6.660e-91 Identity = 165/197 (83.76%), Postives = 179/197 (90.86%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCI FTK+ NQ K+T YAQ+SQIRQI RKMREIM QAASCDLK LV KFI EMIG+EIEKATSSIYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 330.872 bits (847), Expect = 1.921e-90 Identity = 161/197 (81.73%), Postives = 180/197 (91.37%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL +E+H++RKIRLRAED+QGKNVLTNFWGM+FTTDKLRSLVRKW +LIEA+VDVKTTD++TLR+FCIGFTK+ NQ KRTCYAQ+SQIRQI RKMREIMV QA SCDLK LV+KFI E IG+EIEKATSSIYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224 HSP 2 Score: 24.6386 bits (52), Expect = 1.921e-90 Identity = 14/28 (50.00%), Postives = 15/28 (53.57%), Query Frame = 3 Query: 738 GKLREVPRQLPPKMLGEKGDRPTEEAHA 821 GKL EV +G K DRP EEA A Sbjct: 226 GKLMEVHGDYNEDDIGTKLDRPAEEAVA 253
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 324.709 bits (831), Expect = 6.892e-88 Identity = 160/197 (81.22%), Postives = 176/197 (89.34%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL +E+ AYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLRLFCI FTK+ NQ K+TCYAQ+SQIRQI RKMREIM A SCDLK LV+KFI E IG+EIEKATSSIYPLQNV++RKVK LKAP F+ Sbjct: 28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFD 224
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 320.472 bits (820), Expect = 1.478e-87 Identity = 157/197 (79.70%), Postives = 174/197 (88.32%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYD+KAP F RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD +TLR+FCI FTKR NQVKRTCYAQ+SQIRQI RKM EIMV +A+SCDLK LV KFI E IG+EIEKAT IYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224 HSP 2 Score: 25.409 bits (54), Expect = 1.478e-87 Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 3 Query: 738 GKLREVPRQLPPKMLGEKGDRPTEEAHAGSPT 833 GKL EV + +G K DRP +E PT Sbjct: 226 GKLMEVHGDYTAEDVGVKVDRPADETMVEEPT 257
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3) HSP 1 Score: 319.701 bits (818), Expect = 7.281e-87 Identity = 157/197 (79.70%), Postives = 175/197 (88.83%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYD+KAPS F RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL +E++AYRKIRLRAEDVQG+NVL FWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD++TLRLFCI FTKR NQVKRTCYAQ+SQIRQI RKMR+IMV +A+SCDLK LV KFI E IG+EIEKAT IYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224 HSP 2 Score: 23.8682 bits (50), Expect = 7.281e-87 Identity = 12/32 (37.50%), Postives = 16/32 (50.00%), Query Frame = 3 Query: 738 GKLREVPRQLPPKMLGEKGDRPTEEAHAGSPT 833 GKL +V + +G K DRP +E PT Sbjct: 226 GKLMDVHGDYSAEDVGVKVDRPADEMAVEEPT 257
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 1.300e-86 Identity = 157/197 (79.70%), Postives = 177/197 (89.85%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMVAQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL +E+ ++RKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD++TLR+FCI FTK+ PNQ KRTCYAQ+SQIRQI RKM EIM QA+SCDLK LV KFI E IG+EIEKATSSI+PLQNV++RKVK LKAP F+ Sbjct: 28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFD 224
BLAST of DY260375 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2) HSP 1 Score: 316.235 bits (809), Expect = 2.451e-85 Identity = 158/198 (79.80%), Postives = 174/198 (87.88%), Query Frame = 1 Query: 142 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIPRKMREIMV-AQAASCDLKSLVEKFIAEMIGKEIEKATSSIYPLQNVFLRKVKTLKAPNFE 732 DWYDIKAPS F RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL +E+ AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++VDVKTTDN+TLRLFCI FTKR NQVKRTCYAQ+SQIRQI KMREIM+ +A+SCDLK LV KFI E IGK+IEKAT IYPLQNVF+RKVK LKAP F+ Sbjct: 28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFD 225 The following BLAST results are available for this feature:
BLAST of DY260375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260375 ID=DY260375; Name=DY260375; organism=Citrus clementina; type=EST; length=1226bpback to top |