DY260444

Overview
NameDY260444
Unique NameDY260444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1339
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1531 contig Ccv1_Contig1531:1..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.483e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNC +KKCGHSNQLRPK KIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.529e-22
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNC KKKCGHSNQLRPK KIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.529e-22
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNC KKKCGHSNQLRPK KIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.634e-22
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNC KKKCGHSNQLRPK KIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.273e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NC KK CGH+NQLRPK K+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of DY260444 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.418e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 
Query:  102 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCTKKKCGHSNQLRPKNKIK 257
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNC KKKCGH+N LRPK K+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of DY260444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_NICSY1.483e-2294.2360S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ2.529e-2294.2360S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH2.529e-2294.2360S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA5.634e-2294.2360S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE5.273e-2084.6260S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP3.418e-1982.6960S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT3.418e-1982.6960S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB3.418e-1982.6960S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG3.418e-1982.6960S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA3.418e-1982.6960S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260444 ID=DY260444; Name=DY260444; organism=Citrus clementina; type=EST; length=1339bp
TTATCTTCGCTGTTTAGCAACTTGAGGATGGCCGTACTCTAGCCGATTAC
AATATCCAAAAGGAGTCAACTCTGCCTCTGGTTCTGATGCTTCGTGGTGG
TATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACA
AGATGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAAC
TGCACGAAGAAGAAATGTGGGCACAGCAACCAGCTGAGGCCAAAGAACAA
GATCAAGTAGATATTCTGCAGACAAATGCTACATTTTATACTGAAACACG
ATGTTTTGCCTATAATATGTACCATCAACTATTGCCTAATAATAGTTGTC
ACTTAGTACGTGATTTCTGTTTCAAGATGTTTCCCAGGTTGACAGTATTT
GTAGACTGATTACTATCCCCTCTATGTGCCGTGCCTACGAGCCCTTTATT
AGAAACAAAAAGCATACACCCCCAACCTCTCCTGAACCAAGTAGACCATA
TAACAACACCATGCCTTACCTGTTTCTCACACCGACCTGCTCGCTACCTC
CTCAACCTGCAATCCCTTTTTCTCCCCCCCCACCTGACCCCCCCACCTCC
CGCACGCCACTTACCCCTTCCAGGCGCTTTCACTTTGCTGATCCTTCACC
CCTGATCCAAATCACTCGACTGCCACACTCCACCACCTACCTCCACCCAC
CCATCAACCCCAAAACCCACCCATGACCCCTCCACCTCCCAACGTTTCTT
GTCACTCCCTCTACCTGATATTTACTCTTTTCCCCCTTTCAACTCACAAC
CCCATCTTACCTCCCATCGCCAATTTCCCTTCCCTCACCTCGCCCCTACC
CCATCCTACCACCACTCACATCACAATCCACCCCACCCCCCCACAACTTT
CCACACTCCTCACCCCCCACCTGTAAATCATCTCTCACTCACTTCCACAA
CCACAGATCCCAGTCTCACACACTCCGCTACATTCCCCCCATACGCTCTA
CCCCTTTACAGCTCCCCCTTCCCCACCACCCCTCCCCGACCCAACATCCC
CTACCACGCCACCCCCACCTCTATACATCCTCACCTCTCCCAGAACTCCT
TACCCACCCCCCCCTCCCATTTTCGTCAACTCCCCTGCCCACTCTCTCCC
CACTCAATCCTCCATCACTCTCTAACTGCCCATCACTCCTCCCAACACAA
CCATTATCGCACATTCCTGCCCCACCGTCCCACCATTTATTCCGTCGCTC
CCCACTACCACACCAGCTTATACCTCCGACCTCCCACGTAGACAGCCTCA
CTCCCTATTTAATTAACACCACTCCCTATCCGGACTGAT
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