DY260760

Overview
NameDY260760
Unique NameDY260760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length980
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1667 contig Ccv1_Contig1667:1..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24B_ARATH (Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 2.117e-78
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 1
Query:    7 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            GPVRCSRCK YINPFMKFIDQGR+FIC+ CG+TDETPRDYHCNL             ELCRGTVEFVATKEYMVRDPMPAV+FFLIDVSMNA+QTGATAAAC+AI QV+SDLPEGPRT VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPL++D++V        +L+++L++I +  Q  K+P    G+ +++
Sbjct:  426 GPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDETPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACNAIQQVLSDLPEGPRTFVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLETDVVVQ-LSECRQHLELLLDSIPTMFQESKIPESAFGAAVKA 623          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24C_ARATH (Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 3.611e-78
Identity = 142/201 (70.65%), Postives = 164/201 (81.59%), Query Frame = 1
Query:    1 DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            + GPVRCSRCK Y+NPFMKFIDQGR+FIC+LCG+TDETPRDY CNL             ELCRGTV+FVATKEYMVRDPMPAV+FFLIDVSMNA+QTGATAAACSAI QV+SDLPEGPRT VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPL++D+IV        +L+I+LE+I +  Q  K P    G+ +++
Sbjct:  428 ESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDETPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACSAIQQVLSDLPEGPRTFVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLETDVIVQ-LSECRQHLEILLESIPTMFQESKSPESAFGAAVKA 627          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24A_ARATH (Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.640e-38
Identity = 68/162 (41.98%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    7 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            G +RC RC+ Y+NPF+ F D GR++ C++C   ++ P +Y  +L             EL +G+VE +A  EYMVR PMP ++FFLIDVS++A ++G        I   + +LP  PRT +G  T+DST+HFYN+K +L QP M++V D++D++ PL  D++V
Sbjct:  367 GIIRCRRCRTYVNPFVTFTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMVRPPMPPIYFFLIDVSISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNMKSSLSQPQMMVVSDLDDIFVPLPDDLLV 528          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24B_HUMAN (Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.882e-33
Identity = 69/160 (43.12%), Postives = 98/160 (61.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            VRC  C+ YINPF+ FIDQ RR+ C+LC   ++ P ++  N              E+   TVEF+A+ +YM+R P PAV+ F++DVS NA++ G     C ++ + +  LP   RT +G  TFDSTIHFYNL+  L QP MLIV D++DV+ P    ++V
Sbjct:  603 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEFMYN-PLTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLV 760          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24A_BOVIN (Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.912e-32
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            VRC  C+ YINPF+ F+DQ RR+ C+LC   ++ P ++  N              E+   T+EF+A  EYM+R P P V+ F+ DVS NA++TG   + C ++   +  LP   RT +G  TFDSTIHFY+L+  L QP MLIV D+EDV+ P+  +++V
Sbjct:  435 VRCRSCRTYINPFVSFLDQ-RRWKCNLCYRVNDVPEEFMYN-PLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAIETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLSQPQMLIVSDIEDVFIPMPENLLV 592          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24A_HUMAN (Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 6.672e-32
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            VRC  C+ YINPF+ F+DQ RR+ C+LC   ++ P ++  N              E+   T+EF+A  EYM+R P P V+ F+ DVS NA++TG   + C ++   +  LP   RT +G  TFDSTIHFY L+ +L QP MLIV D+EDV+ P+  +++V
Sbjct:  429 VRCRSCRTYINPFVSFLDQ-RRWKCNLCYRVNDVPEEFLYN-PLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQESLSQPQMLIVSDIEDVFIPMPENLLV 586          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24A_MOUSE (Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.714e-32
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIV 492
            VRC  C+ YINPF+ F+DQ RR+ C+LC   ++ P ++  N              E+   T+EF+A  EYM+R P P V+ F+ DVS NA++TG   + C ++   +  LP   RT +G  TFDSTIHFY+L+  L QP MLIV D++DV+ P+  +++V
Sbjct:  426 VRCRSCRTYINPFVNFLDQ-RRWKCNLCYRVNDVPEEFMYN-PLTRVYGEPHKRPEVQNATIEFMAPSEYMLRPPQPPVYLFVFDVSHNAIETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYSLQEGLSQPQMLIVSDIDDVFIPMPENLLV 583          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SC24C_HUMAN (Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 2.146e-30
Identity = 70/188 (37.23%), Postives = 104/188 (55.32%), Query Frame = 1
Query:    1 DMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRD--PMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLP-----EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENI 543
            + GP+RC+RCKAY+ PFM+FI+ GRRF C  C   ++ P  Y  +L             EL  G+ EF+AT +Y   +  P P  F F+IDVS NA++TG     C  +  ++  LP     E     VG  T++  +HFYN+K +L QP M++V DV D++ PL     + GF V VN  + ++ ++
Sbjct:  419 ESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPL-----LDGFLVNVNESRAVITSL 601          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_DICDI (Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.463e-27
Identity = 66/180 (36.67%), Postives = 100/180 (55.56%), Query Frame = 1
Query:   13 VRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXX-ELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPE--GPRTMVGIATFDSTIHFYNLK-RALQQPLMLIVPDVEDVYTPLQSDIIV---PGFRVPVNNLKIM 531
            +RC RC+ YINPF+ +++ G R+ C++C   ++TP+DY   +              EL +G VEF+A+ +Y+VR P P  +FF++DV   ++ +G    A +AI   + DL E    R   GI TFD ++HFYNLK     +P M +V D++ VY P   D +V    G  V  N L I+
Sbjct:  332 IRCRRCRTYINPFVTWLNGGGRWRCNMCENINDTPQDYFSPIDFTTGKRSDILNRPELQKGCVEFLASSDYLVRPPQPPTYFFIVDVCYESIVSGMLNTAINAIKTTLGDLIEKSNGRARFGIMTFDDSLHFYNLKSNPSNRPQMFVVTDMDQVYVPPFEDFLVNLKDGLEVVENTLNII 511          
BLAST of DY260760 vs. ExPASy Swiss-Prot
Match: SEC24_COCIM (Protein transport protein SEC24 OS=Coccidioides immitis GN=SEC24 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.463e-27
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 1
Query:   16 RCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVVSDLPE-GPRTMVGIATFDSTIHFYNLKR---ALQQPLMLIVPDVEDVYTPLQSDIIVPGFRVPVNNLKIMLENISSTAQNHKLPRQPSGSLIQS 603
            RC RC++YINPF+ F+D G R+ C++C  T++ P+ +  +              EL    VEFVA +EYMVR P P V+ FLIDVS +++ TG  A A   I + +  +P    RT +G    DS++H++ + R       P ML+V D+++ + P+  D++V        N++I L+ +    QN +      GS +++
Sbjct:  254 RCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQGFDWDATAQQALDRWQRP-ELNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYSSVTTGLLATAARCIKESLDRIPNTDRRTRLGFIAVDSSLHYFTIPRDGSESSDPSMLVVSDLDEPFLPIPGDLLVT-LTECRENIEIFLDKLQEMFQNTQNGGSAMGSALRA 451          
The following BLAST results are available for this feature:
BLAST of DY260760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SC24B_ARATH2.117e-7870.35Protein transport protein Sec24-like At4g32640 OS=... [more]
SC24C_ARATH3.611e-7870.65Protein transport protein Sec24-like CEF OS=Arabid... [more]
SC24A_ARATH1.640e-3841.98Protein transport protein Sec24-like At3g07100 OS=... [more]
SC24B_HUMAN7.882e-3343.13Protein transport protein Sec24B OS=Homo sapiens G... [more]
SC24A_BOVIN3.912e-3242.50Protein transport protein Sec24A OS=Bos taurus GN=... [more]
SC24A_HUMAN6.672e-3242.50Protein transport protein Sec24A OS=Homo sapiens G... [more]
SC24A_MOUSE8.714e-3241.88Protein transport protein Sec24A OS=Mus musculus G... [more]
SC24C_HUMAN2.146e-3037.23Protein transport protein Sec24C OS=Homo sapiens G... [more]
SEC24_DICDI6.463e-2736.67Protein transport protein SEC24 OS=Dictyostelium d... [more]
SEC24_COCIM6.463e-2733.00Protein transport protein SEC24 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260760 ID=DY260760; Name=DY260760; organism=Citrus clementina; type=EST; length=980bp
GACATGGGTCCTGTTCGATGTTCTCGCTGCAAAGCCTACATAAATCCTTT
CATGAAGTTCATTGATCAGGGAAGGAGGTTCATCTGCAGTTTATGTGGTT
TTACCGATGAGACTCCCCGTGATTATCACTGCAATCTAGGTCCAGATGGT
AGGCGTAGAGATGCTGATGACAGGCCCGAGCTATGTAGGGGGACGGTTGA
ATTTGTTGCCACAAAGGAATATATGGTTCGTGATCCCATGCCGGCTGTGT
TTTTCTTCCTTATTGATGTATCCATGAATGCCTTACAGACTGGTGCGACT
GCCGCAGCTTGCAGTGCAATCAGTCAAGTTGTTTCAGATCTGCCTGAAGG
TCCTCGAACAATGGTGGGAATTGCAACATTTGACTCCACAATCCATTTCT
ACAATTTGAAACGTGCGCTACAGCAGCCATTGATGCTCATTGTCCCTGAT
GTAGAAGATGTTTATACTCCTTTACAATCTGATATTATTGTTCCAGGTTT
CCGAGTGCCTGTCAACAATTTAAAGATAATGCTGGAAAACATTTCTAGCA
CGGCACAAAACCACAAATTGCCGAGACAACCTTCGGGGAGTCTAATCCAA
AGTAACTTATAGTGAGCTCTAAATAATGAATGTGGGCAACCATCAGAACT
TTTGATTATGCAGATCTGTATTCTAAAAGTCATTCACGATATTCCTAAAA
AGGTTAAAAAAAATAACATAATATTTTTCATGCAAAAAAAGCCAAACCCA
CAAATCACCACTAAACCACAAATAAACAAACAACAGAACACGTCATATAT
TATGCTCTAATTATAAACTCTCGTTTATGATTTCTTACTCACTATACATA
ACTTGCCACTATTATAATACAGAATTTTACACCATGCCACCCCACGTAAT
ATCAGTCAGGATCATTAGAAAATAAAAATAATCATTGACATATACATCTA
GCAAAACATCATAGCCATTATACTATTACG
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