gene-KPL71_018751-mRNA2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018751-mRNA2 vs. DB:SwissProt
Match: FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.768e-62 Identity = 121/261 (46.36%), Postives = 164/261 (62.84%), Query Frame = 1 Query: 76 HPDIIETHVLSRLDASALASTSCVSSQLHSLIASNESLWTNICNSTWPSTDIPRLRHVISSFPKGPRSFFSDSFTNPDIAASSSPVNLDCPSGLISAVDIYYQHKTVLSKAVLTES----FDTSPFRVDLLDPKDSVPTGVGQ-PVNEDLSRELGERLTLSWILIDPIGRRAMNLSSYKPVTVERRSLSTGEVHVRYGWVFNAGEKGSTTECVRCGISVTCEGSQNQSGEMHVTKVSLELEDMYGKQLSGKDSLVILRKGM 843
H DIIE+H+L+RLD + LAS SC SS LH L ASNE LW+ IC STWPS G RSFFSD+++ + A + S ++ P LISAVD++Y+ K + S+ V TE+ F +SP R+DL+D KD+V T + + ED R+L + LTLSWI+IDPIG+RA N+SS++PV+V+R +S GEV ++ V A V C I+V G + EMHV +VSL++E M G L+G+DSLVILR M
Sbjct: 21 HDDIIESHILTRLDGATLASVSCASSHLHHL-ASNEILWSKICRSTWPSC------------SGGSRSFFSDAYSMVETAGTVSDLDRPFPE-LISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWIS-GEVEAQFATVVGA---------VECVITVVTCGEE----EMHVREVSLKVEKMEGTHLNGRDSLVILRSVM 253
BLAST of gene-KPL71_018751-mRNA2 vs. DB:SwissProt
Match: FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 2.193e-55 Identity = 129/328 (39.33%), Postives = 187/328 (57.01%), Query Frame = 1 Query: 76 HPDIIETHVLSRLDASALASTSCVSSQLHSLIASNESLWTNICNSTWPSTDIPRLRHVISSFPKGPRSFFSDSFTNPDIAASSSPVNLDCPSGLISAVDIYYQHKTVLSKAVLTES-------FDTSPFRVDLLDPKDSVPTGVGQPVN--EDLSRELGERLTLSWILIDPIGRRAMNLSSYKPVTVERRSLSTGEVHVRYGWVFNAGEKGSTTECVRCGISVTC-EGSQNQSGEMHVTKVSLELEDMYGKQLSGKDSLVILRKGMAXXXXXXXXXXXXXXXXXXDYREMRREKILSEVKKHQGRIDTLYMAFGALIFASLGLVVVSR 1029
H DII+T +L+RLD LAST+ SS L +L + E LW + TWPS + PR+ ISSFP G RSFF+DS+ P + D P+GLISAVD+YY+ + + SK E+ F +SPFRVD+LDPK+SV T + P E +++ E + L+WILIDPI +RA N+SS K V+ RR+ TG++ +R+ E V CG + E + GE+HV V L++ED+ GK + G+DSLVIL+ + GKR E K R E+Y M+ + ++ ++ + + DT+ M FG +F L ++ R
Sbjct: 16 HSDIIQTQILTRLDGPTLASTATTSSYLQTL-CTEEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSY--PFTEHTWQSEKHDPPTGLISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSA-RRNWLTGDLEIRFS-TVVTAEAAEVAAVVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQGLLDGKRSCKDDEERRAKERYEEYVRMKIQWRENKERREKAQ-DTICMIFGFSMFVLLWSFILLR 337
BLAST of gene-KPL71_018751-mRNA2 vs. DB:SwissProt
Match: FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.202e-54 Identity = 131/331 (39.58%), Postives = 195/331 (58.91%), Query Frame = 1 Query: 82 DIIETHVLSRLDASALASTSCVSSQLHSLIASNESLWTNICNSTWPSTDIPRLRHVISSFPKGPRSFFSDS--FTNPDIAASSSPVNLDCPSGLISAVDIYYQHKTVLSKAVLTES----FDTSPFRVDLLDPKDSVPTGV---GQPVNEDLSRELGERLTLSWILIDPIGRRAMNLSSYKPVTVERRSLSTGEVHVRYGWVFNAGEKGSTTECVRCGISVTC---EGSQNQSGEMHVTKVSLELEDMYGKQLSGKDSLVILRKGMAXXXXXXXXXXXXXXXXXXDYREMRREKILSEVKKHQGRIDTLYMAFGALIFASLGLVVVSRIFM 1038
D++ +++L+RLD S+LA+ SC S L+S S+ESLW C++TWPST R++ +IS+FP G R+FFSDS F D+ + P ++D S LISAVDI+Y+ + S+ +TE+ F SP RVDL++PK+ +PT V Q ++ +L E L+LSWILIDP +RA ++S+ KPV+V R L TGEVHV++ +F G K +E V ++V + ++ M + +VSL ED G+ L GK SL IL M KR G EEEGK + +Y M R+ +E+K +G+ + A + LG ++ +FM
Sbjct: 27 DVLRSNILTRLDGSSLAALSCTCSNLNSF-CSDESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEHDVGINLPP-SVD-TSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWL-TGEVHVKFSSIFVVGNK-KRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAMGMKRRFRAGGEEEGKEKYIEY--MERKTAKAEMKWRRGKETAMETAACWIAVLLLGFLLCFYLFM 350 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018751-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018751-mRNA2; organism=Citrus sinensis; type=mRNA; length=1053bpback to top protein sequence of gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=350bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:20549823..20550875+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1053bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20549823..20550875+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20549823..20550875+ >gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018751-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018751-mRNA2; organism=Citrus sinensis; type=CDS; length=1053bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20549823..20550875+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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