Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017010.1.exon1 | CMJ_chr9_017010.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017010.1.cds.1 | CMJ_chr9_017010.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017010.1_cmj_v1 | CMJ_chr9_017010.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr9_017010.1_cmj_v1 | CMJ_chr9_017010.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr9_017010.1 vs. ExPASy TrEMBL
Match:
A0A2H5Q0Y8|A0A2H5Q0Y8_CITUN (PHD_Oberon domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_186060 PE=4 SV=1)
HSP 1 Score: 166.777 bits (421), Expect = 9.025e-48
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0
Query: 15 DLTEEIGQEFNFVYVILASIVLTFLCNGNNVRAASDAIENNSVDEIVQVPPFPGADGINSCPPSVAQMSRQQNMKAASVF 94
DLTEEIGQEFNFVYVILASIVLTFLCNGNNVRAASDAIENNSVDEIVQVPPFPGADGINSCPPSVAQMSRQQNMKAASV
Sbjct: 346 DLTEEIGQEFNFVYVILASIVLTFLCNGNNVRAASDAIENNSVDEIVQVPPFPGADGINSCPPSVAQMSRQQNMKAASVL 425
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr9_017010.1_cmj_v1 ID=CMJ_chr9_017010.1_cmj_v1; Name=CMJ_chr9_017010.1; organism=Citrus maxima; type=mRNA; length=285bp
ATGTCAAGAGGGCACAATTTTGTACAGGATTTTTTTCTGGTAGACTTGAC
AGAGGAAATAGGGCAAGAGTTCAATTTTGTCTACGTAATTCTTGCAAGCA
TTGTGCTAACATTTTTATGCAACGGAAACAATGTAAGGGCTGCAAGTGAT
GCAATTGAGAATAATTCTGTAGATGAGATAGTGCAGGTGCCGCCATTCCC
TGGAGCCGACGGCATAAATTCTTGTCCACCTTCAGTTGCCCAAATGAGCC
GTCAACAAAATATGAAGGCTGCATCTGTGTTTTAA
back to topprotein sequence of CMJ_chr9_017010.1_cmj_v1
>CMJ_chr9_017010.1_cmj_v1 ID=CMJ_chr9_017010.1_cmj_v1; Name=CMJ_chr9_017010.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=95bp
MSRGHNFVQDFFLVDLTEEIGQEFNFVYVILASIVLTFLCNGNNVRAASD
AIENNSVDEIVQVPPFPGADGINSCPPSVAQMSRQQNMKAASVF*
back to topmRNA from alignment at chr9:26399675..26399959+
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=285bp; location=Sequence derived from: chr9:26399675..26399959+ (Citrus maxima
ATGTCAAGAGGGCACAATTTTGTACAGGATTTTTTTCTGGTAGACTTGAC
AGAGGAAATAGGGCAAGAGTTCAATTTTGTCTACGTAATTCTTGCAAGCA
TTGTGCTAACATTTTTATGCAACGGAAACAATGTAAGGGCTGCAAGTGAT
GCAATTGAGAATAATTCTGTAGATGAGATAGTGCAGGTGCCGCCATTCCC
TGGAGCCGACGGCATAAATTCTTGTCCACCTTCAGTTGCCCAAATGAGCC
GTCAACAAAATATGAAGGCTGCATCTGTGTTTTAA
back to topCoding sequence (CDS) from alignment at chr9:26399675..26399959+
>CMJ_chr9_017010.1_cmj_v1 ID=CMJ_chr9_017010.1_cmj_v1; Name=CMJ_chr9_017010.1; organism=Citrus maxima; type=CDS; length=285bp; location=Sequence derived from: chr9:26399675..26399959+ (Citrus maxima
ATGTCAAGAGGGCACAATTTTGTACAGGATTTTTTTCTGGTAGACTTGAC
AGAGGAAATAGGGCAAGAGTTCAATTTTGTCTACGTAATTCTTGCAAGCA
TTGTGCTAACATTTTTATGCAACGGAAACAATGTAAGGGCTGCAAGTGAT
GCAATTGAGAATAATTCTGTAGATGAGATAGTGCAGGTGCCGCCATTCCC
TGGAGCCGACGGCATAAATTCTTGTCCACCTTCAGTTGCCCAAATGAGCC
GTCAACAAAATATGAAGGCTGCATCTGTGTTTTAA
back to top
