CMJ_chr3_012140.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A2H5MVY7|A0A2H5MVY7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_273000 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 6.707e-86 Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMMLFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWEQYAVALSHVCTQSRRAGVLLSLSINVYYFLLSIYVPLLLNFFRGAFRSADLGPAHRFWMEN 133
MPIWPTHNHELLPDMSSLLTMMLITNLNSWM+LFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYW QY V LSH+CTQSRRAGVLLSLSINVYYFLLSIY+PLLLNFFRGAFRSADLGPAHRF MEN
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWAQYVVVLSHLCTQSRRAGVLLSLSINVYYFLLSIYIPLLLNFFRGAFRSADLGPAHRFLMEN 133
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: V4T9U6|V4T9U6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002557mg PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 9.729e-86 Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMMLFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWEQYAVALSHVCTQSRRAGVLLSLSINVYYFLLSIYVPLLLNFFRGAFRSADLGPAHRFWMENVMDLS 138
MPIWPTHNHELLPDMSSLLTMMLITNLNSWM+LFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYW QY VALSH+CTQSRRAGVLLSLSIN YYFLLSIY+PLLLNFFRGAFRSADLGPAHRF MEN + +S
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWAQYVVALSHLCTQSRRAGVLLSLSINAYYFLLSIYIPLLLNFFRGAFRSADLGPAHRFLMENGVAMS 138
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A2H5PP71|A0A2H5PP71_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154300 PE=4 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.316e-83 Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMMLFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWEQYAVALSHVCTQSRRAGVLLSLSINVYYFLLSIYVPLLLNFFRGAFRSADLGPAHRFWMENVM 135
MPIWPTHNHELLPDMSSLLTMMLITNLNSWM+LFAEVLGSEYAGIATLAPTLVLVWGFSIRI+SASSIFYW QY VALSH+CTQS RAGVLLSLSINVYYF+LSIY+PLLLNFFR AFRSADL PAHRF MENV+
Sbjct: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMILFAEVLGSEYAGIATLAPTLVLVWGFSIRIDSASSIFYWAQYVVALSHLCTQSTRAGVLLSLSINVYYFILSIYIPLLLNFFRDAFRSADLRPAHRFLMENVV 135
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A2H5PP45|A0A2H5PP45_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154330 PE=4 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 8.964e-81 Identity = 121/135 (89.63%), Postives = 126/135 (93.33%), Query Frame = 0 Query: 1 MPIWPTHNHELLPDMSSLLTMMLITNLNSWMMLFAEVLGSEYAGIATLAPTLVLVWGFSIRIESASSIFYWEQYAVALSHVCTQSRRAGVLLSLSINVYYFLLSIYVPLLLNFFRGAFRSADLGPAHRFWMENVM 135
MPIWPTHNHELL +MSSLLTMML+TNL+SWM+LFAEVLGSEYA IAT APTLVLVWGFSIRIESASSIF W QY VALSHVCTQSRRAGVLLSLSINVYYFLLSIY P LLNFFRGAFRSADLGPAHRF MENV+
Sbjct: 1 MPIWPTHNHELLTNMSSLLTMMLMTNLHSWMILFAEVLGSEYAAIATFAPTLVLVWGFSIRIESASSIFDWAQYVVALSHVCTQSRRAGVLLSLSINVYYFLLSIYTPFLLNFFRGAFRSADLGPAHRFLMENVV 135
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A067DAZ9|A0A067DAZ9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0013441mg PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.009e-15 Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPP 197
TKTASPREQKQHMRSLLVLG+GN LKALAAQKSVNVITNVS+ R P
Sbjct: 187 TKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAP 237
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A5J5T1D6|A0A5J5T1D6_GOSBA (Xpo1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G191500v1 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.297e-14 Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPPG 198
TKTASP+EQKQHMRSLL+L +GN LKALAAQK+VN+ITNV++ RGP+ PG
Sbjct: 1116 TKTASPKEQKQHMRSLLLLATGNNLKALAAQKNVNIITNVTARARGPVNAPG 1167
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A5J5T5U8|A0A5J5T5U8_GOSBA (Xpo1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G191500v1 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.300e-14 Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPPG 198
TKTASP+EQKQHMRSLL+L +GN LKALAAQK+VN+ITNV++ RGP+ PG
Sbjct: 1140 TKTASPKEQKQHMRSLLLLATGNNLKALAAQKNVNIITNVTARARGPVNAPG 1191
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A5D2E209|A0A5D2E209_GOSDA (Xpo1 domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G204000v1 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-14 Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPPG 198
TKTASP+EQKQHMRSLL+L +GN LKALAAQK+VN+ITNV++ RGP+ PG
Sbjct: 1140 TKTASPKEQKQHMRSLLLLATGNNLKALAAQKNVNIITNVTARARGPVNAPG 1191
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A5D2MMM6|A0A5D2MMM6_GOSTO (Xpo1 domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G208100v1 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.417e-14 Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPPG 198
TKTASP+EQKQHMRSLL+L +GN LKALAAQK+VN+ITNV++ RGP+ PG
Sbjct: 1140 TKTASPKEQKQHMRSLLLLATGNNLKALAAQKNVNIITNVTARARGPVNAPG 1191
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Match: A0A1U8IBL4|A0A1U8IBL4_GOSHI (protein HASTY 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107893251 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.458e-14 Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 Query: 147 TKTASPREQKQHMRSLLVLGSGNKLKALAAQKSVNVITNVSSCFRGPMGPPG 198
TKTASP+EQKQHMRSLL+L +GN LKALAAQK+VN+ITNV++ RGP+ PG
Sbjct: 1140 TKTASPKEQKQHMRSLLLLATGNNLKALAAQKNVNIITNVTARARGPVNAPG 1191 The following BLAST results are available for this feature:
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr3_012140.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr3_012140.1_cmj_v1 ID=CMJ_chr3_012140.1_cmj_v1; Name=CMJ_chr3_012140.1; organism=Citrus maxima; type=mRNA; length=666bpback to top protein sequence of CMJ_chr3_012140.1_cmj_v1 >CMJ_chr3_012140.1_cmj_v1 ID=CMJ_chr3_012140.1_cmj_v1; Name=CMJ_chr3_012140.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=222bpback to top mRNA from alignment at chr3:30272933..30275746- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2814bp; location=Sequence derived from: chr3:30272933..30275746- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr3:30272933..30275746- >CMJ_chr3_012140.1_cmj_v1 ID=CMJ_chr3_012140.1_cmj_v1; Name=CMJ_chr3_012140.1; organism=Citrus maxima; type=CDS; length=666bp; location=Sequence derived from: chr3:30272933..30275746- (Citrus maximaback to top |