Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_019430.1.exon1 | CMJ_chr8_019430.1.exon1_cmj_v1 | Citrus maxima | exon |
| CMJ_chr8_019430.1.exon2 | CMJ_chr8_019430.1.exon2_cmj_v1 | Citrus maxima | exon |
| CMJ_chr8_019430.1.exon3 | CMJ_chr8_019430.1.exon3_cmj_v1 | Citrus maxima | exon |
| CMJ_chr8_019430.1.exon4 | CMJ_chr8_019430.1.exon4_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_019430.1.cds.1 | CMJ_chr8_019430.1.cds.1_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr8_019430.1.cds.2 | CMJ_chr8_019430.1.cds.2_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr8_019430.1.cds.3 | CMJ_chr8_019430.1.cds.3_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr8_019430.1.cds.4 | CMJ_chr8_019430.1.cds.4_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_019430.1_cmj_v1 | CMJ_chr8_019430.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr8_019430.1_cmj_v1 | CMJ_chr8_019430.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Match:
A0A2H5NJ91|A0A2H5NJ91_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_050440 PE=4 SV=1)
HSP 1 Score: 155.992 bits (393), Expect = 1.072e-45
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 5 LSSYNLIILEIREA-QDRTQEKKKMYPRPRVRIKEQQQEEEEKAENHFSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKACNSASKDISKDIKQ 108
LSSY L ILEIR Q+R +KKKMYPRPRVRIKEQQQEEE KAENHFSPPNDKGSILFLRVLESLA DS ST+ENQSGSPPSI+RIKKACNSASKDISKDIKQ
Sbjct: 21 LSSYILTILEIRSTRQNRGAKKKKMYPRPRVRIKEQQQEEE-KAENHFSPPNDKGSILFLRVLESLALADSSSTKENQSGSPPSIARIKKACNSASKDISKDIKQ 124
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Match:
A0A2H5NJI3|A0A2H5NJI3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_050440 PE=4 SV=1)
HSP 1 Score: 155.606 bits (392), Expect = 3.992e-45
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 0
Query: 5 LSSYNLIILEIREA-QDRTQEKKKMYPRPRVRIKEQQQEEEEKAENHFSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKACNSASKDISKDIKQ 108
LSSY L ILEIR Q+R +KKKMYPRPRVRIKEQQQEEE KAENHFSPPNDKGSILFLRVLESLA DS ST+ENQSGSPPSI+RIKKACNSASKDISKDIKQ
Sbjct: 52 LSSYILTILEIRSTRQNRGAKKKKMYPRPRVRIKEQQQEEE-KAENHFSPPNDKGSILFLRVLESLALADSSSTKENQSGSPPSIARIKKACNSASKDISKDIKQ 155
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Match:
A0A067EZ31|A0A067EZ31_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047327mg PE=4 SV=1)
HSP 1 Score: 154.836 bits (390), Expect = 3.246e-44
Identity = 89/104 (85.58%), Postives = 93/104 (89.42%), Query Frame = 0
Query: 5 LSSYNLIILEIREAQDRTQEKKKMYPRPRVRIKEQQQEEEEKAENHFSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKACNSASKDISKDIKQ 108
LSSY L LEIR R ++KKKMYPRPRVRIKEQQQEEE KAENHFSPPNDKGSILFLRVLESLA PDS ST+ENQSGSPPSI+RIKKACNSASKDISKDIKQ
Sbjct: 103 LSSYILTFLEIRST--RQKKKKKMYPRPRVRIKEQQQEEE-KAENHFSPPNDKGSILFLRVLESLALPDSSSTKENQSGSPPSIARIKKACNSASKDISKDIKQ 203
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Match:
V4T9J5|V4T9J5_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023016mg PE=4 SV=1)
HSP 1 Score: 133.265 bits (334), Expect = 3.895e-38
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0
Query: 28 MYPRPRVRIKEQQQEEEEKAENHFSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKACNSASKDISKDIKQ 108
MYPRPRVRIKEQQQEEE KAENHFSPPNDKGSILFLRVLESLA DS ST+ENQSGSPPSI+RIKKACNSASKDISKDIKQ
Sbjct: 1 MYPRPRVRIKEQQQEEE-KAENHFSPPNDKGSILFLRVLESLALADSSSTKENQSGSPPSIARIKKACNSASKDISKDIKQ 80
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Match:
A0A5C7I2Z5|A0A5C7I2Z5_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010887 PE=4 SV=1)
HSP 1 Score: 67.3958 bits (163), Expect = 2.793e-11
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 0
Query: 27 KMYPRPRVRIKEQQQEEEEKAENHFSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKAC 95
++YP PRVR+KEQ QE+ + SPPND GS LFLR+LESL+ D +EN S P+ +++ K C
Sbjct: 8 QVYPTPRVRVKEQDQEDGQV----ISPPNDTGSFLFLRLLESLSLQDCSLPKENHCNSSPANAKVTKTC 72
The following BLAST results are available for this feature:
BLAST of CMJ_chr8_019430.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 5
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr8_019430.1_cmj_v1 ID=CMJ_chr8_019430.1_cmj_v1; Name=CMJ_chr8_019430.1; organism=Citrus maxima; type=mRNA; length=336bp
ATGAAACGCAGACTCTCATCCTACAATTTGATTATTCTGGAGATTAGAGA
AGCACAAGACAGAACCCAAGAAAAAAAAAAAATGTACCCACGGCCAAGAG
TCAGAATCAAGGAACAACAGCAAGAAGAAGAAGAAAAAGCGGAGAATCAC
TTTTCTCCTCCAAATGACAAGGGATCCATTCTGTTTCTGAGGGTTCTTGA
ATCTCTTGCTTCACCAGACAGCCCTTCAACTGAGGAAAATCAAAGCGGTT
CTCCACCTTCAATTTCCAGAATTAAAAAGGCTTGTAACTCTGCATCCAAA
GATATCAGCAAGGACATCAAACAATCTTTTCATTAA
back to topprotein sequence of CMJ_chr8_019430.1_cmj_v1
>CMJ_chr8_019430.1_cmj_v1 ID=CMJ_chr8_019430.1_cmj_v1; Name=CMJ_chr8_019430.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=112bp
MKRRLSSYNLIILEIREAQDRTQEKKKMYPRPRVRIKEQQQEEEEKAENH
FSPPNDKGSILFLRVLESLASPDSPSTEENQSGSPPSISRIKKACNSASK
DISKDIKQSFH*
back to topmRNA from alignment at chr8:31469259..31470005+
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=747bp; location=Sequence derived from: chr8:31469259..31470005+ (Citrus maxima
ATGAAACGCAGAGTACCATCTTTTTCACAGTCATCGGAGACCGTTGCCTT
TTGCTTTTAATACGTTATGAAGGTTCCTGATTCCGTATTCTTCACTAGAG
GAAGAGCCAAAGCCATTTGAATTAGCTTAAGTCCTATACTGAGTCTACAG
ATCTTATGCTTTTTTTTGTTTCTTTCATTTTTCTCTTCTGGGATTTGTTT
ATTTGATCTTAGCTCTCATCCTACAATTTGATTATTCTGGAGATTAGAGA
AGCACAAGACAGAACCCAAGAAAAAAAAAAAAGTATGTTTACTGCATATT
ACGCATATCCCATATAATATTAGCATTTATACATCATGCGAAAAAAAGTC
TTTCTTTCTTATCTTTGTTCAAATTCATGCAATTTTCTTACTTGGGTATG
TGTTATTTTTGGACTTTGAAGTGTACCCACGGCCAAGAGTCAGAATCAAG
GAACAACAGCAAGAAGAAGAAGAAAAAGCGGAGAATCACTTTTCTCCTCC
AAATGACAAGGGATCCATTCTGTTTCTGAGGGTTCTTGAATCTCTTGCTT
CACCAGACAGCCCTTCAACTGGTACATAATCTATAATACGGGTTAGCAAA
ATTTAGTTCTTAATCGCCATTGCATTCTTTGTTTTTGTAACAGAGGAAAA
TCAAAGCGGTTCTCCACCTTCAATTTCCAGAATTAAAAAGGCTTGTAACT
CTGCATCCAAAGATATCAGCAAGGACATCAAACAATCTTTTCATTAA
back to topCoding sequence (CDS) from alignment at chr8:31469259..31470005+
>CMJ_chr8_019430.1_cmj_v1 ID=CMJ_chr8_019430.1_cmj_v1; Name=CMJ_chr8_019430.1; organism=Citrus maxima; type=CDS; length=336bp; location=Sequence derived from: chr8:31469259..31470005+ (Citrus maxima
ATGAAACGCAGACTCTCATCCTACAATTTGATTATTCTGGAGATTAGAGA
AGCACAAGACAGAACCCAAGAAAAAAAAAAAATGTACCCACGGCCAAGAG
TCAGAATCAAGGAACAACAGCAAGAAGAAGAAGAAAAAGCGGAGAATCAC
TTTTCTCCTCCAAATGACAAGGGATCCATTCTGTTTCTGAGGGTTCTTGA
ATCTCTTGCTTCACCAGACAGCCCTTCAACTGAGGAAAATCAAAGCGGTT
CTCCACCTTCAATTTCCAGAATTAAAAAGGCTTGTAACTCTGCATCCAAA
GATATCAGCAAGGACATCAAACAATCTTTTCATTAA
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