CMJ_chr8_019420.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A067F8I0|A0A067F8I0_CITSI (CBS domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026712mg PE=4 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 2.692e-134 Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0 Query: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT 188
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKA AHNG+GITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT
Sbjct: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGINCGFLLTVEGAMTANIISSFLT 188
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A067F9C1|A0A067F9C1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026712mg PE=4 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 1.316e-90 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 Query: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKA AHNG+GITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG
Sbjct: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A2H5PRF9|A0A2H5PRF9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_160580 PE=4 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 3.106e-90 Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 Query: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKA AHNG+GITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG
Sbjct: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGVGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: V4UAD9|V4UAD9_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029198mg PE=4 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 3.157e-90 Identity = 143/175 (81.71%), Postives = 148/175 (84.57%), Query Frame = 0 Query: 1 MSSISIPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFA--RWLLKFVGGINCGFLLT 173
MSSISIPSCL LARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKA AHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG + +L+ NS F + LL G G L+T
Sbjct: 1 MSSISIPSCLALARLNANGVINSVPHLQLPITVATPSHLSKRLRFFTVSREVKAFAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGNQN-DTSLFPNVNSSWKTFNELQRLLSKTNGKVVGDLMT 174
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A5C7I6S7|A0A5C7I6S7_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011266 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 3.087e-54 Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 0 Query: 6 IPSCLTLARLNANGVINSVPHLQLPITVATPSHLSKR--LRFFTVSREVKALAHNG--IGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
+PSC TL RL GV+NS H LP TVA PS LSKR LRFF + AL+ NG +G+ NSVPPRNGTYTVGDFMT+KEDLH KTTTTVDEALE LVEKRITGFPVIDDDW LVGVVSDYDLLALD+ISG
Sbjct: 1 MPSCSTLTRLC--GVVNSFTHPSLPCTVAVPSPLSKRHRLRFF---HDPAALSGNGLGVGVNNSVPPRNGTYTVGDFMTRKEDLHVAKTTTTVDEALEALVEKRITGFPVIDDDWTLVGVVSDYDLLALDTISG 129
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A5J5BSB7|A0A5J5BSB7_9ASTE (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_020700 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.605e-42 Identity = 93/170 (54.71%), Postives = 109/170 (64.12%), Query Frame = 0 Query: 19 GVINSVPHLQLPITVATPSHLSKR---------LRFFTVSREV---KALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGIN---CGFLLT 173
G ++V H QLP T++ S L +R LR+ E L + G TNS+PPR+GTYTVGDFMTKKE+LH VKTTTTVDEALE LVEKRITGFPVIDDDWKLVGVVSDYDLLALDSI GS + NL+ +S F + K +G N G L+T
Sbjct: 17 GATSAVHHHQLPCTLSYHSRLGQRPSPSLSPRILRYSDYVVEPLRPAVLPASAAGTTNSIPPRDGTYTVGDFMTKKENLHFVKTTTTVDEALETLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSIPGSGQP-DTNLFPDVDSSWKTFNE-IQKLLGKTNGKVVGDLMT 184
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A5B7A5V5|A0A5B7A5V5_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_021468 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.952e-42 Identity = 89/163 (54.60%), Postives = 104/163 (63.80%), Query Frame = 0 Query: 19 GVINSVPHLQLPITVATPSHLSKRLRFF---TVSREV-----KALAHN------GIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMRKLGFNLYFGFNSGNAYFARWLLKFVGGIN 167
G + V H QLP T++ S L +R F ++SR + + H G TNS+PPR+GTY VGDFMTKKEDLH VKTTTTVDEALE LVEKRITGFPVIDDDWKLVG+VSDYDLLALDSISG NL+ +S F + K +G N
Sbjct: 17 GATSPVHHHQLPCTLSYHSRLPQRPSFLPTCSISRRRLQYSDRVVEHRLPASLTAAGTTNSMPPRDGTYRVGDFMTKKEDLHVVKTTTTVDEALETLVEKRITGFPVIDDDWKLVGIVSDYDLLALDSISGGGHA-DTNLFPDVDSSWKTFNE-IQKLLGKTN 177
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A5B7A800|A0A5B7A800_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_021469 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.153e-42 Identity = 80/133 (60.15%), Postives = 91/133 (68.42%), Query Frame = 0 Query: 19 GVINSVPHLQLPITVATPSHLSKRLRFFTV----------------SREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
G ++V H QLP ++ S L +R F R AL + G TNS+PPR+GTYTVGDFMTK+EDL+ VKTTTTVDEALE LVEKRITGFPVIDDDWKL+GVVSDYDLLALDSISG
Sbjct: 17 GATSAVHHHQLPCALSYHSRLRQRPPFLATCSLSPRRLQYSDQLVQPRRPAALPASAAGTTNSMPPRDGTYTVGDFMTKREDLNVVKTTTTVDEALETLVEKRITGFPVIDDDWKLIGVVSDYDLLALDSISG 149
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A5B7A5P0|A0A5B7A5P0_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_021470 PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.604e-42 Identity = 80/133 (60.15%), Postives = 91/133 (68.42%), Query Frame = 0 Query: 19 GVINSVPHLQLPITVATPSHLSKRLRFFTV----------------SREVKALAHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
G ++V H QLP ++ S L +R F R AL + G TNS+PPR+GTYTVGDFMTK+EDL+ VKTTTTVDEALE LVEKRITGFPVIDDDWKL+GVVSDYDLLALDSISG
Sbjct: 17 GATSAVHHHQLPCALSYHSRLRQRPPFLATCSLSPRRLQYSDQLVQPRRPAALPASAAGTTNSMPPRDGTYTVGDFMTKREDLNVVKTTTTVDEALETLVEKRITGFPVIDDDWKLIGVVSDYDLLALDSISG 149
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Match: A0A7N2MXL6|A0A7N2MXL6_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.890e-42 Identity = 78/108 (72.22%), Postives = 90/108 (83.33%), Query Frame = 0 Query: 30 PITVATPSHLSKRLRFFTVSREVKAL--AHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
P ++ATPS LSKR RF + + + A +G+G+TNS+PPR GTYTVGDFMTKKE+LH VK TTTV+EAL+ LVEKRITGFPVIDD WKLVGVVSDYDLLALDSISG
Sbjct: 43 PSSLATPS-LSKRRRFHFSAGGGRLVVSALSGVGVTNSIPPRGGTYTVGDFMTKKEELHVVKPTTTVEEALDALVEKRITGFPVIDDQWKLVGVVSDYDLLALDSISG 149
BLAST of CMJ_chr8_019420.3 vs. ExPASy Swiss-Prot
Match: CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 1.530e-37 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0 Query: 62 ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR 138
+TNS PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLALDSISGS R
Sbjct: 64 MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGR 140
BLAST of CMJ_chr8_019420.3 vs. ExPASy Swiss-Prot
Match: CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX2 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.903e-32 Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0 Query: 41 KRLRFFTVSREVKAL--AHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
+R F+ S V A A + NSVP +NG YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDSISG
Sbjct: 43 RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISG 139
BLAST of CMJ_chr8_019420.3 vs. Araport11
Match: AT4G36910.1 (| Cystathionine beta-synthase (CBS) family protein | Chr4:17391016-17393218 REVERSE LENGTH=236 | 201606) HSP 1 Score: 132.494 bits (332), Expect = 1.565e-38 Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 0 Query: 62 ITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGSMR 138
+TNS PR+G YTVG+FMTKKEDLH VK TTTVDEALE LVE RITGFPVID+DWKLVG+VSDYDLLALDSISGS R
Sbjct: 64 MTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGR 140
BLAST of CMJ_chr8_019420.3 vs. Araport11
Match: AT4G34120.1 (| Cystathionine beta-synthase (CBS) family protein | Chr4:16341194-16342893 FORWARD LENGTH=238 | 201606) HSP 1 Score: 118.627 bits (296), Expect = 5.016e-33 Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0 Query: 41 KRLRFFTVSREVKAL--AHNGIGITNSVPPRNGTYTVGDFMTKKEDLHAVKTTTTVDEALERLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISG 135
+R F+ S V A A + NSVP +NG YTVGDFMT +++LH VK +T+VD+ALE LVEK++TG PVIDD+W LVGVVSDYDLLALDSISG
Sbjct: 43 RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISG 139 The following BLAST results are available for this feature:
BLAST of CMJ_chr8_019420.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_019420.3 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_019420.3 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_019420.3_cmj_v1 ID=CMJ_chr8_019420.3_cmj_v1; Name=CMJ_chr8_019420.3; organism=Citrus maxima; type=mRNA; length=567bpback to top protein sequence of CMJ_chr8_019420.3_cmj_v1 >CMJ_chr8_019420.3_cmj_v1 ID=CMJ_chr8_019420.3_cmj_v1; Name=CMJ_chr8_019420.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=189bpback to top mRNA from alignment at chr8:31431790..31437712+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=5923bp; location=Sequence derived from: chr8:31431790..31437712+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:31431790..31437712+ >CMJ_chr8_019420.3_cmj_v1 ID=CMJ_chr8_019420.3_cmj_v1; Name=CMJ_chr8_019420.3; organism=Citrus maxima; type=CDS; length=567bp; location=Sequence derived from: chr8:31431790..31437712+ (Citrus maximaback to top |