Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_017880.1.exon1 | CMJ_chr3_017880.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_017880.1.cds.1 | CMJ_chr3_017880.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr3_017880.1_cmj_v1 | CMJ_chr3_017880.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr3_017880.1_cmj_v1 | CMJ_chr3_017880.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr3_017880.1 vs. ExPASy TrEMBL
Match:
V4SBA4|V4SBA4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029727mg PE=4 SV=1)
HSP 1 Score: 71.2478 bits (173), Expect = 1.931e-14
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0
Query: 1 MSGRMRLLGLAVVLAVLLSSCLAANRRALNTETYSYDVHHRSSGRVLAEEDDQNVKPEAPAIDLTNHHGIPRSQFH-----AGGS 80
MS +MRLLGLA+VL ++LSSCLAAN RALN ETY RVL+ E D NVK P ++ NHH IPR F+ AGGS
Sbjct: 1 MSAKMRLLGLALVL-MILSSCLAANGRALNAETY--------DSRVLS-EGDPNVKSGYPPSNVNNHHYIPRQDFNQYGGDAGGS 75
BLAST of CMJ_chr3_017880.1 vs. ExPASy TrEMBL
Match:
A0A2H5Q540|A0A2H5Q540_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_196970 PE=4 SV=1)
HSP 1 Score: 66.6254 bits (161), Expect = 1.269e-12
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 0
Query: 5 MRLLGLAVVLAVLLSSCLAANRRALNTETYSYDVHHRSSGRVLAEEDDQNVKPEAPAIDLTNHHGIPRSQFH-----AGGS 80
MRLLGLA+VL ++LSSCLAAN RALN ETY RVL+ E D NVK P ++ NHH IPR F+ AGGS
Sbjct: 1 MRLLGLALVL-MILSSCLAANGRALNAETY--------DSRVLS-EGDPNVKSGYPPSNVNNHHYIPRQDFNQYGGDAGGS 71
BLAST of CMJ_chr3_017880.1 vs. ExPASy TrEMBL
Match:
A0A067F9S0|A0A067F9S0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040498mg PE=4 SV=1)
HSP 1 Score: 66.6254 bits (161), Expect = 1.269e-12
Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 0
Query: 5 MRLLGLAVVLAVLLSSCLAANRRALNTETYSYDVHHRSSGRVLAEEDDQNVKPEAPAIDLTNHHGIPRSQFH-----AGGS 80
MRLLGLA+VL ++LSSCLAAN RALN ETY RVL+ E D NVK P ++ NHH IPR F+ AGGS
Sbjct: 1 MRLLGLALVL-MILSSCLAANGRALNAETY--------DSRVLS-EGDPNVKSGYPPSNVNNHHYIPRQDFNQYGGDAGGS 71
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_017880.1_cmj_v1 ID=CMJ_chr3_017880.1_cmj_v1; Name=CMJ_chr3_017880.1; organism=Citrus maxima; type=mRNA; length=246bp
ATGAGTGGAAGAATGAGGCTTTTAGGGCTTGCTGTGGTGCTTGCGGTACT
GCTGAGCTCTTGCTTGGCTGCAAACAGAAGGGCTTTAAATACCGAAACCT
ATTCCTATGACGTGCATCATAGGAGTAGCGGCCGGGTACTGGCGGAGGAG
GACGACCAGAATGTGAAACCTGAGGCCCCTGCAATCGATCTAACTAACCA
CCACGGTATTCCCAGGAGCCAATTTCATGCAGGTGGCAGTGGCTAA
back to topprotein sequence of CMJ_chr3_017880.1_cmj_v1
>CMJ_chr3_017880.1_cmj_v1 ID=CMJ_chr3_017880.1_cmj_v1; Name=CMJ_chr3_017880.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=82bp
MSGRMRLLGLAVVLAVLLSSCLAANRRALNTETYSYDVHHRSSGRVLAEE
DDQNVKPEAPAIDLTNHHGIPRSQFHAGGSG*
back to topmRNA from alignment at chr3:35563784..35564029-
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=246bp; location=Sequence derived from: chr3:35563784..35564029- (Citrus maxima
ATGAGTGGAAGAATGAGGCTTTTAGGGCTTGCTGTGGTGCTTGCGGTACT
GCTGAGCTCTTGCTTGGCTGCAAACAGAAGGGCTTTAAATACCGAAACCT
ATTCCTATGACGTGCATCATAGGAGTAGCGGCCGGGTACTGGCGGAGGAG
GACGACCAGAATGTGAAACCTGAGGCCCCTGCAATCGATCTAACTAACCA
CCACGGTATTCCCAGGAGCCAATTTCATGCAGGTGGCAGTGGCTAA
back to topCoding sequence (CDS) from alignment at chr3:35563784..35564029-
>CMJ_chr3_017880.1_cmj_v1 ID=CMJ_chr3_017880.1_cmj_v1; Name=CMJ_chr3_017880.1; organism=Citrus maxima; type=CDS; length=246bp; location=Sequence derived from: chr3:35563784..35564029- (Citrus maxima
ATGAGTGGAAGAATGAGGCTTTTAGGGCTTGCTGTGGTGCTTGCGGTACT
GCTGAGCTCTTGCTTGGCTGCAAACAGAAGGGCTTTAAATACCGAAACCT
ATTCCTATGACGTGCATCATAGGAGTAGCGGCCGGGTACTGGCGGAGGAG
GACGACCAGAATGTGAAACCTGAGGCCCCTGCAATCGATCTAACTAACCA
CCACGGTATTCCCAGGAGCCAATTTCATGCAGGTGGCAGTGGCTAA
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