CMJ_chr3_009700.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr3_009700.1
Unique Name	CMJ_chr3_009700.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	303

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL119	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjdvaR115	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR109	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmjfhsR203	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR189	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmjzkR214	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL217	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL223	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR264	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR272	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0327	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0383	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR0470	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR0553	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL223	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL565	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR153	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL143	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL238	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL284	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL062	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cllcmjL155	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR204	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxR248	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR170	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL350	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL616	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
cmjmpkR152	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
cmjmpjR164	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cigcmjL453	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhcmjL146	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR269	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR276	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR156	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjneiR168	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR257	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR272	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL108	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL164	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL540	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL166	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL552	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL174	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL537	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR168	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR159	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR246	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR260	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR258	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR283	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
Egl268340.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
hap1-g8875.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
LW067290.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
g5182.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
Fh3g15700.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
drCitSine.Jinhong.1.0.HB3g24500.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
hap1-g8082.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
CP3g002497.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
Csi03G023260.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
g8757.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Cau_v1.primary_g14884.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
g8747.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
gene-KPL71_015011-mRNA2	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HA3g24650.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
mi_v1.0.primary_g15577.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
hap2-g8854.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
g8806.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Chh186780.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g9451.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
g9773.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
EVM_prediction_chr2.2_youzi.960	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr3_009700	CMJ_chr3_009700_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009700.1.exon1	CMJ_chr3_009700.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009700.1.cds.1	CMJ_chr3_009700.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr3_009700.1_cmj_v1	CMJ_chr3_009700.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr3_009700.1_cmj_v1	CMJ_chr3_009700.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr3_009700.1 vs.
BLAST of CMJ_chr3_009700.1 vs.
BLAST of CMJ_chr3_009700.1 vs.

BLAST of CMJ_chr3_009700.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009700.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr3_009700.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..58

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:26105134..26105436-
coding sequence from alignment at chr3:26105134..26105436-

mRNA sequence

>CMJ_chr3_009700.1_cmj_v1 ID=CMJ_chr3_009700.1_cmj_v1; Name=CMJ_chr3_009700.1; organism=Citrus maxima; type=mRNA; length=303bp
ATGGGCATGGAAGCTAGAAATGGTGATGAGACGGCACCGACGATGGAATC
GGAATTCATTAGTGCCAAGTTCGGGCCATGGATGATAGTATCTAGAAAAG
GAAGGTTCAAGGGAAATAAGGAAAGAGATTCTCCCAAGGCATCAAGCCGA
AATAGTTTTGGAAAGGGGGATGAAGGTTCGAGATTTGGTATTCTTGCCAA
TTTTTCTACGAATGAAAATCACGATGAACCAAATATAGAAGATTCCAAAT
ATAGCTATTGGGCCATATTTGACCGTTGCACCTCCTATCTTCAAAGGAAA
TAA

protein sequence of CMJ_chr3_009700.1_cmj_v1

>CMJ_chr3_009700.1_cmj_v1 ID=CMJ_chr3_009700.1_cmj_v1; Name=CMJ_chr3_009700.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=101bp
MGMEARNGDETAPTMESEFISAKFGPWMIVSRKGRFKGNKERDSPKASSR
NSFGKGDEGSRFGILANFSTNENHDEPNIEDSKYSYWAIFDRCTSYLQRK
*

mRNA from alignment at chr3:26105134..26105436-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=303bp; location=Sequence derived from: chr3:26105134..26105436- (Citrus maxima
ATGGGCATGGAAGCTAGAAATGGTGATGAGACGGCACCGACGATGGAATC
GGAATTCATTAGTGCCAAGTTCGGGCCATGGATGATAGTATCTAGAAAAG
GAAGGTTCAAGGGAAATAAGGAAAGAGATTCTCCCAAGGCATCAAGCCGA
AATAGTTTTGGAAAGGGGGATGAAGGTTCGAGATTTGGTATTCTTGCCAA
TTTTTCTACGAATGAAAATCACGATGAACCAAATATAGAAGATTCCAAAT
ATAGCTATTGGGCCATATTTGACCGTTGCACCTCCTATCTTCAAAGGAAA
TAA

Coding sequence (CDS) from alignment at chr3:26105134..26105436-

>CMJ_chr3_009700.1_cmj_v1 ID=CMJ_chr3_009700.1_cmj_v1; Name=CMJ_chr3_009700.1; organism=Citrus maxima; type=CDS; length=303bp; location=Sequence derived from: chr3:26105134..26105436- (Citrus maxima
ATGGGCATGGAAGCTAGAAATGGTGATGAGACGGCACCGACGATGGAATC
GGAATTCATTAGTGCCAAGTTCGGGCCATGGATGATAGTATCTAGAAAAG
GAAGGTTCAAGGGAAATAAGGAAAGAGATTCTCCCAAGGCATCAAGCCGA
AATAGTTTTGGAAAGGGGGATGAAGGTTCGAGATTTGGTATTCTTGCCAA
TTTTTCTACGAATGAAAATCACGATGAACCAAATATAGAAGATTCCAAAT
ATAGCTATTGGGCCATATTTGACCGTTGCACCTCCTATCTTCAAAGGAAA
TAA