Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr2_005720.1.exon2 CMJ_chr2_005720.1.exon2_cmj_v1 Citrus maxima exon CMJ_chr2_005720.1.exon1 CMJ_chr2_005720.1.exon1_cmj_v1 Citrus maxima exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr2_005720.1.utr3.1 CMJ_chr2_005720.1.utr3.1_cmj_v1 Citrus maxima three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr2_005720.1.cds.2 CMJ_chr2_005720.1.cds.2_cmj_v1 Citrus maxima CDS CMJ_chr2_005720.1.cds.1 CMJ_chr2_005720.1.cds.1_cmj_v1 Citrus maxima CDS
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr2_005720.1.utr5.1 CMJ_chr2_005720.1.utr5.1_cmj_v1 Citrus maxima five_prime_UTR
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr2_005720.1_cmj_v1 CMJ_chr2_005720.1_cmj_v1 Citrus maxima polypeptide CMJ_chr2_005720.1_cmj_v1 CMJ_chr2_005720.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A067G7V7|A0A067G7V7_CITSI (LysM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040436mg PE=4 SV=1)
HSP 1 Score: 163.696 bits (413), Expect = 1.361e-50
Identity = 87/91 (95.60%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MASNKTS+FR+LALVLA+LLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCS+VTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA
Sbjct: 1 MASNKTSLFRNLALVLAVLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A2H5N271|A0A2H5N271_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_010890 PE=4 SV=1)
HSP 1 Score: 157.532 bits (397), Expect = 3.016e-48
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MA+NKTSVFRSLALVLALLLIVSMAESRTFAGGLETS PTCDSVYGAQEGDTCS V EEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA
Sbjct: 1 MATNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDSVYGAQEGDTCSVVAEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
V4TPJ9|V4TPJ9_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017864mg PE=4 SV=1)
HSP 1 Score: 157.532 bits (397), Expect = 3.016e-48
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MA+NKTSVFRSLALVLALLLIVSMAESRTFAGGLETS PTCDSVYGAQEGDTCS V EEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA
Sbjct: 1 MATNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDSVYGAQEGDTCSVVAEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
V4SX50|V4SX50_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003665mg PE=4 SV=1)
HSP 1 Score: 147.517 bits (371), Expect = 2.819e-44
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MAS KTSVF +LAL +ALLLIVS+AESR FA GL +PPTCDSVYGAQEGDTC DV+++FNLS ++FLAINPNI+CDA+FVGQWLCVAGSA
Sbjct: 1 MASYKTSVFCNLALFVALLLIVSVAESRNFAVGLVKAPPTCDSVYGAQEGDTCFDVSQKFNLSNELFLAINPNIDCDAVFVGQWLCVAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A2H5N037|A0A2H5N037_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_275080 PE=4 SV=1)
HSP 1 Score: 147.517 bits (371), Expect = 3.146e-44
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MAS KTSVF +LAL +ALLLIVS+AESR FA GL SPPTCDSVYGAQEGDTC DV+++FNL+ ++FLAINPNI+CDA+FVGQWLCVAGSA
Sbjct: 1 MASYKTSVFCNLALFVALLLIVSVAESRNFAVGLVKSPPTCDSVYGAQEGDTCFDVSQKFNLTNELFLAINPNIDCDAVFVGQWLCVAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A2H5QNM9|A0A2H5QNM9_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_247130 PE=4 SV=1)
HSP 1 Score: 136.346 bits (342), Expect = 7.293e-40
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MAS K SVFR+LALVLALLLIVSMAES FA G SPPTCDSVYGAQEGDTC DV++EFNLS + FLAINPNINCDA+FVGQWLC+AGSA
Sbjct: 1 MASYKNSVFRNLALVLALLLIVSMAESSNFAVGFVKSPPTCDSVYGAQEGDTCFDVSKEFNLSNEFFLAINPNINCDAVFVGQWLCIAGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
V4V0U3|V4V0U3_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003398mg PE=4 SV=1)
HSP 1 Score: 134.42 bits (337), Expect = 5.255e-39
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MAS K SVFR LALVLALLLIVSMAES FA GL SPPTCDS YGAQEGDTCSDV+++F LS ++FLAINPNINCDA+FVGQWLC+ GSA
Sbjct: 1 MASYKNSVFRKLALVLALLLIVSMAESSNFAVGLVKSPPTCDSAYGAQEGDTCSDVSKKFKLSNELFLAINPNINCDAVFVGQWLCIVGSA 91
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
V4THS3|V4THS3_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10033348mg PE=4 SV=1)
HSP 1 Score: 122.479 bits (306), Expect = 2.259e-34
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFA-GGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MASNKTSVFRSLALVLALLLIVS+AESRT + GG S PTCDSVYG QEGDTC DV +EFNLST+ F AINPN+NCDAIFVGQWLCVAGSA
Sbjct: 1 MASNKTSVFRSLALVLALLLIVSLAESRTLSVGGAVKSLPTCDSVYGTQEGDTCFDVAKEFNLSTEFFSAINPNLNCDAIFVGQWLCVAGSA 92
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A2H5NVR7|A0A2H5NVR7_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_080570 PE=4 SV=1)
HSP 1 Score: 118.242 bits (295), Expect = 1.306e-32
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0
Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFA-GGLETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
MASNKTSVFRSLALVLALLLIVS+AESRT + GG S PTCDSVYG QEGDTC DV + F+LST+ F AINPN+NCDAIFVGQWLCVAGSA
Sbjct: 1 MASNKTSVFRSLALVLALLLIVSLAESRTLSVGGAVKSLPTCDSVYGTQEGDTCFDVAKAFSLSTEFFSAINPNLNCDAIFVGQWLCVAGSA 92
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Match:
A0A314Y9M7|A0A314Y9M7_PRUYE (LysM domain-containing protein isoform X2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_21884 PE=4 SV=1)
HSP 1 Score: 112.464 bits (280), Expect = 3.052e-30
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0
Query: 2 ASNKTSVFRSLALVLALLLIVSMAESRTFAGGL--ETSPPTCDSVYGAQEGDTCSDVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGS 90
A +K ++ +L LVL+L+L+++ AESR G E + P CDSVYGA+EGDTC V E+FNLS+D FL+INPNINCD+ FVGQWLC G+
Sbjct: 4 AGSKVALILNLILVLSLVLMIATAESRQLGIGFGKEETSPVCDSVYGAEEGDTCGSVIEKFNLSSDFFLSINPNINCDSFFVGQWLCTQGT 94
The following BLAST results are available for this feature:
BLAST of CMJ_chr2_005720.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 10
20 40 60 80 100 120 140 160 180 200 220 240 260 Expect = 1.36e-50 / Id = 95.60 Expect = 3.02e-48 / Id = 95.60 Expect = 3.02e-48 / Id = 95.60 Expect = 2.82e-44 / Id = 78.02 Expect = 3.15e-44 / Id = 78.02 Expect = 7.29e-40 / Id = 81.32 Expect = 5.25e-39 / Id = 79.12 Expect = 2.26e-34 / Id = 82.61 Expect = 1.31e-32 / Id = 80.43 Expect = 3.05e-30 / Id = 57.14 Sequence A0A067G7V7|A0A067G7V7_CITSI A0A2H5N271|A0A2H5N271_CITUN V4TPJ9|V4TPJ9_CITCL V4SX50|V4SX50_CITCL A0A2H5N037|A0A2H5N037_CITUN A0A2H5QNM9|A0A2H5QNM9_CITUN V4V0U3|V4V0U3_CITCL V4THS3|V4THS3_CITCL A0A2H5NVR7|A0A2H5NVR7_CITUN A0A314Y9M7|A0A314Y9M7_PRUYE back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr2_005720.1_cmj_v1 ID=CMJ_chr2_005720.1_cmj_v1; Name=CMJ_chr2_005720.1; organism=Citrus maxima; type=mRNA; length=276bp back to top protein sequence of CMJ_chr2_005720.1_cmj_v1
>CMJ_chr2_005720.1_cmj_v1 ID=CMJ_chr2_005720.1_cmj_v1; Name=CMJ_chr2_005720.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=92bp back to top mRNA from alignment at chr2:3455575..3456082-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=508bp; location=Sequence derived from: chr2:3455575..3456082- (Citrus maximaTCACAAAAAGAGAGAGTTTTTTCAATTAACGTAAACAAATACAGAAATTA
ATTAATCAAGAC ATGGCCAGCAACAAAACCTCTGTGTTCCGCAGCTTGGC
TTTGGTCCTTGCTCTTCTCCTCATTGTCTCCATGGCTGAAAGCCGCACGT
TCGCCG GTGGGCTCG
AAACGTCTCCTCCAACTTGTGATTCGGTGTATGGTGCCCAGGAAGGCGAT
ACTTGCTCCGACGTTACAGAGGAGTTCAACTTGAGCACCGACGTTTTTCT
TGCCATCAACCCCAATATTAACTGTGATGCCATCTTCGTCGGTCAATGGC
TTTGTGTTGCCGGCAGCGCTTAA TTAATTAAACTGCCACCTACTAATCAG
AGATTGAG back to top Coding sequence (CDS) from alignment at chr2:3455575..3456082-
>CMJ_chr2_005720.1_cmj_v1 ID=CMJ_chr2_005720.1_cmj_v1; Name=CMJ_chr2_005720.1; organism=Citrus maxima; type=CDS; length=276bp; location=Sequence derived from: chr2:3455575..3456082- (Citrus maxima back to top
