drCitSine.Jinhong.1.0.HB2g29990.1 | Citrus Genome Database

Transcript Overview


Name	drCitSine.Jinhong.1.0.HB2g29990.1
Unique Name	drCitSine.Jinhong.1.0.HB2g29990.1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	332

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Jinhong genome v1.0	2024-03-19
InterProScan Analysis for Citrus sinensis cv. Jinhong v1.0 proteins	2024-05-22
Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs UniProt TrEMBL	2024-05-22
Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs UniProt Swissprot	2024-05-22
Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs Araport11	2024-05-22

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
csjcsjR150	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjcsjR164	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvaR072	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csjcsjR194	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbR086	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csjswoR078	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csjzkR0150	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csjswoR107	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csjfhsR138	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csjfhsR159	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csjfhsR164	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii

Orthologs


Gene/Transcript	Assembly	Species
Fh5g05280.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
Pt2g007070.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
Fh2g07720.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
gene-KPL71_003544-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HB5g50960.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
drCitSine.Jinhong.1.0.HA5g49590.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
gene-KPL70_002933-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
Cs_ont_2g028460.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
drCitSine.Jinhong.1.0.HB2g29990	drCitSine.Jinhong.1.0.HB2g29990	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drCitSine.Jinhong.1.0.HB2g29990.1	drCitSine.Jinhong.1.0.HB2g29990.1	Citrus sinensis	polypeptide
drCitSine.Jinhong.1.0.HB2g29990.1	drCitSine.Jinhong.1.0.HB2g29990.1-protein	Citrus sinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCitSine.Jinhong.1.0.HB2g29990.1.exon.1	drCitSine.Jinhong.1.0.HB2g29990.1.exon.1	Citrus sinensis	exon
drCitSine.Jinhong.1.0.HB2g29990.1.exon.2	drCitSine.Jinhong.1.0.HB2g29990.1.exon.2	Citrus sinensis	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCitSine.Jinhong.1.0.HB2g29990.1.five_prime_utr.1	drCitSine.Jinhong.1.0.HB2g29990.1.five_prime_utr.1	Citrus sinensis	five_prime_UTR
drCitSine.Jinhong.1.0.HB2g29990.1.five_prime_utr.2	drCitSine.Jinhong.1.0.HB2g29990.1.five_prime_utr.2	Citrus sinensis	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCitSine.Jinhong.1.0.HB2g29990.1.cds.1	drCitSine.Jinhong.1.0.HB2g29990.1.cds.1	Citrus sinensis	CDS

Homology

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: V4UC44|V4UC44_CITCL (LOB domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017006mg PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.219e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A2H5P3Z7|A0A2H5P3Z7_CITUN (LOB domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_099980 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A067EMS6|A0A067EMS6_CITSI (LOB domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031572mg PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.489e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A6A2ZWK0|A0A6A2ZWK0_HIBSY (LOB domain-containing protein 6 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110694pilonHSYRG00131 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.094e-42
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN PCAACKCLRRKCMPDC+FAPYFPPEEPQKF+NVHKIFGASNVSKLLN+VLPHQREDAVNSLA
Sbjct:    1 MASSSYSNPPCAACKCLRRKCMPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNDVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A8T1R076|A0A8T1R076_CARIL (LOB domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_03G042900 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.307e-42
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSNAPCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNAPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A5N6QXL4|A0A5N6QXL4_9ROSI (LOB domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007376 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.881e-42
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A836EM22|A0A836EM22_9ROSI (LOB domain protein OS=Salix suchowensis OX=1278906 GN=IMY05_001G0218900 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.972e-42
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A6A1V8X2|A0A6A1V8X2_9ROSI (LOB domain-containing protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G015557 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.995e-42
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A6P6B9Y7|A0A6P6B9Y7_DURZI (LOB domain-containing protein 25-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111315917 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.540e-42
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN+PCAACKCLRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEV PHQREDAVNSLA
Sbjct:    1 MASSSYSNSPCAACKCLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Match: A0A8T1QNV6|A0A8T1QNV6_CARIL (LOB domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_04G028200 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.783e-42
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPHQREDAVNSLA
Sbjct:    1 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.314e-38
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0

Query:    1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+LPHQREDAVNSLA
Sbjct:    1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLA 72

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.840e-37
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0

Query:    4 SSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            S+Y+N+PCAACK LRRKC  DCVFAPYFPPEEP KF NVH+IFGASNVSK+L+EV PHQREDAVNSLA
Sbjct:   33 SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLA 100

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.828e-35
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.311e-33
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P+QREDAVNSLA
Sbjct:   35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLA 99

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.311e-33
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P+QREDAVNSLA
Sbjct:   35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLA 99

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.615e-33
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:   30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLA 94

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1 (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.088e-32
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV VH++FGASNV+KL+NE+ P QREDA+NSLA
Sbjct:   30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLA 94

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1 (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.201e-29
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSL 70
            MASSS   +PCAACK LRRKC  +CVFAPYFPP++PQKF  VHK+FGASNV+KLLNE+  +QREDAVNSL
Sbjct:    1 MASSS---SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSL 67

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1 (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.583e-27
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSL 70
            ++ PCAACK LRRKC  +CVFAPYFPP  PQKF+ VH++FGASNV+K+LN++ P QRED VNSL
Sbjct:    2 ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSL 65

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Match: LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.310e-27
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0

Query:    7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSL 70
             ++PCA+CK LRR+C  DC+FAPYFPP++P KF  VHK+FGASNVSK+L E+  HQR DAVNSL
Sbjct:    5 GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSL 68

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. Araport11
Match: | (Symbols: LOB | LATERAL ORGAN BOUNDARIES | chr5:25308723-25309283 REVERSE LENGTH=186)

HSP 1 Score: 129.028 bits (323), Expect = 1.366e-39
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0

Query:    1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+LPHQREDAVNSLA
Sbjct:    1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLA 72

[Close]

Query:    1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+LPHQREDAVNSLA
Sbjct:    1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLA 72

[Close]

Query:    1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+LPHQREDAVNSLA
Sbjct:    1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLA 72

[Close]

Query:    1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+LPHQREDAVNSLA
Sbjct:    1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLA 72

[Close]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. Araport11
Match: | (Symbols: LBD25 | LOB domain-containing protein 25 | chr3:10238731-10240346 FORWARD LENGTH=159)

HSP 1 Score: 124.02 bits (310), Expect = 6.074e-38
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0

Query:    4 SSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            S+Y+N+PCAACK LRRKC  DCVFAPYFPPEEP KF NVH+IFGASNVSK+L+EV PHQREDAVNSLA
Sbjct:   33 SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLA 100

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BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. Araport11
Match: | (Symbols: AS2 | ASYMMETRIC LEAVES 2 | chr1:24400146-24400745 FORWARD LENGTH=199)

HSP 1 Score: 120.939 bits (302), Expect = 2.936e-36
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 0

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

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Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

[Close]

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

[Close]

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

[Close]

Query:    1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLA 71
            MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P QREDAVNSLA
Sbjct:    1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLA 70

The following BLAST results are available for this feature:

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. Araport11

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy TrEMBL
Analysis Date: 2024-05-22 (Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
V4UC44\|V4UC44_CITCL	1.219e-44	100.00	LOB domain-containing protein OS=Citrus clementina...	[more]
A0A2H5P3Z7\|A0A2H5P3Z7_CITUN	1.471e-44	100.00	LOB domain-containing protein OS=Citrus unshiu OX=...	[more]
A0A067EMS6\|A0A067EMS6_CITSI	1.489e-44	100.00	LOB domain-containing protein OS=Citrus sinensis O...	[more]
A0A6A2ZWK0\|A0A6A2ZWK0_HIBSY	1.094e-42	94.37	LOB domain-containing protein 6 OS=Hibiscus syriac...	[more]
A0A8T1R076\|A0A8T1R076_CARIL	1.307e-42	95.77	LOB domain-containing protein OS=Carya illinoinens...	[more]
A0A5N6QXL4\|A0A5N6QXL4_9ROSI	2.881e-42	94.37	LOB domain-containing protein OS=Carpinus fangiana...	[more]
A0A836EM22\|A0A836EM22_9ROSI	3.972e-42	94.37	LOB domain protein OS=Salix suchowensis OX=1278906...	[more]
A0A6A1V8X2\|A0A6A1V8X2_9ROSI	3.995e-42	94.37	LOB domain-containing protein 25 OS=Morella rubra ...	[more]
A0A6P6B9Y7\|A0A6P6B9Y7_DURZI	5.540e-42	94.37	LOB domain-containing protein 25-like isoform X2 O...	[more]
A0A8T1QNV6\|A0A8T1QNV6_CARIL	5.783e-42	94.37	LOB domain-containing protein OS=Carya illinoinens...	[more]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-05-22 (Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1	1.314e-38	86.11	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th...	[more]
LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3	5.840e-37	82.35	LOB domain-containing protein 25 OS=Arabidopsis th...	[more]
Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	2.828e-35	80.28	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thalian...	[more]
LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1	1.311e-33	78.46	LOB domain-containing protein 6 OS=Oryza sativa su...	[more]
LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1	1.311e-33	78.46	LOB domain-containing protein 6 OS=Oryza sativa su...	[more]
LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	3.615e-33	78.46	LOB domain-containing protein 6 OS=Zea mays OX=457...	[more]
Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	3.088e-32	75.38	Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	[more]
LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1	5.201e-29	74.29	LOB domain-containing protein 36 OS=Arabidopsis th...	[more]
LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1	1.583e-27	68.75	LOB domain-containing protein 10 OS=Arabidopsis th...	[more]
LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2	4.310e-27	67.19	LOB domain-containing protein 12 OS=Arabidopsis th...	[more]

BLAST of drCitSine.Jinhong.1.0.HB2g29990.1 vs. Araport11
Analysis Date: 2024-05-22 (Blastp of Citrus sinensis cv. Jinhong v1.0 proteins vs Araport11)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
\|	1.366e-39	86.11	Symbols: LOB \| LATERAL ORGAN BOUNDARIES \| chr5:253...	[more]
\|	1.366e-39	86.11	Symbols: LOB \| LATERAL ORGAN BOUNDARIES \| chr5:253...	[more]
\|	1.366e-39	86.11	Symbols: LOB \| LATERAL ORGAN BOUNDARIES \| chr5:253...	[more]
\|	1.366e-39	86.11	Symbols: LOB \| LATERAL ORGAN BOUNDARIES \| chr5:253...	[more]
\|	6.074e-38	82.35	Symbols: LBD25 \| LOB domain-containing protein 25 ...	[more]
\|	2.936e-36	80.28	Symbols: AS2 \| ASYMMETRIC LEAVES 2 \| chr1:24400146...	[more]
\|	2.936e-36	80.28	Symbols: AS2 \| ASYMMETRIC LEAVES 2 \| chr1:24400146...	[more]
\|	2.936e-36	80.28	Symbols: AS2 \| ASYMMETRIC LEAVES 2 \| chr1:24400146...	[more]
\|	2.936e-36	80.28	Symbols: AS2 \| ASYMMETRIC LEAVES 2 \| chr1:24400146...	[more]
\|	2.936e-36	80.28	Symbols: AS2 \| ASYMMETRIC LEAVES 2 \| chr1:24400146...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus sinensis cv. Jinhong v1.0 proteins
Date Performed: 2024-05-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..70 e-value: 5.7E-23 score: 92.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..71 score: 20.411125
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 8..71

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+
coding sequence from alignment at drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+

mRNA sequence

>drCitSine.Jinhong.1.0.HB2g29990.1 ID=drCitSine.Jinhong.1.0.HB2g29990.1; Name=drCitSine.Jinhong.1.0.HB2g29990.1; organism=Citrus sinensis; type=mRNA; length=332bp
TTTAAATAAGGCTGCTGCTGCGTAAAACTCTTTTTTCCTTGGAACAATCA
AGGATTAACAGATCTATCAGCTCGATATAGAGCCCTATACGAAAGGGAAT
AGAAGAGAACCAAAGGTTGATGGCTTCTTCAAGCTACTCAAATGCTCCAT
GTGCCGCCTGCAAGTGCTTAAGGAGAAAATGCATGCCTGATTGTGTTTTT
GCTCCATATTTTCCACCTGAAGAGCCTCAAAAGTTTGTGAATGTTCACAA
AATATTTGGTGCAAGCAATGTAAGCAAACTCTTAAACGAAGTTCTGCCTC
ATCAGAGGGAAGATGCAGTGAACTCTCTAGCT

protein sequence of drCitSine.Jinhong.1.0.HB2g29990.1

>drCitSine.Jinhong.1.0.HB2g29990.1 ID=drCitSine.Jinhong.1.0.HB2g29990.1; Name=drCitSine.Jinhong.1.0.HB2g29990.1; organism=Citrus sinensis; type=polypeptide; length=71bp
MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASN
VSKLLNEVLPHQREDAVNSLA

mRNA from alignment at drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=946bp; location=Sequence derived from: drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+ (Citrus sinensis
TTTAAATAAGGCTGCTGCTGCGTAAAACTCTTTTTTCCTTGGAACAATCA
AGGATTAACAGATCTATCAGCTCGATATAGAGCCCTATACGAAAGGGAAT
AGAAGGTATATTTTCCTTTTCCTTTTTGGTTCAGAGAAAAATCTAGCTAT
AGCTAGTTGTCAAAAAGATGAGTCACAGTACCAACTGCCTCAAAGCCTTT
TCTTTTCATTTTTTCAAGTTTTTTCTATAAGATTGTGCCTGATATAAGTC
TTATAAGTCCAAATGTTCAAACTTCAAAACGAAAGATCTGTATCTGTTAA
TCCTGTAGCGACATGTTTGATGGCAACTTGAGCTTTAAATTCAAGAGAAT
CCAAGCACCGGAAATCGATGTACATACATAAATATAGGAGTACCGTTAGA
GAATTATTTATAATTTCCCTTAAATTTTTATTATATATTTTACACCGTTT
GTTTTGACTATATGTAGGGTTTTGTCTGAAAATTCAAGATCAAGTACGGT
TTGAAAATTCAACAAATACAGCTTTAGTTTGCAGGCCAAAAAAGTAAAAG
TAGGTTGAAAAGAAAAAAAAATATGGCAGCTAGTGTTTTTAAGAAATTTC
CAATTTCATTGTATTTGAAAATATTAACCAAAAAATTAATTAATTAATTA
ATTATATAAAAGGAGTAATTATTATAAATTAAGCTATAGACACATTGTTT
TCTTTATTACTTGCTGCAGAGAACCAAAGGTTGATGGCTTCTTCAAGCTA
CTCAAATGCTCCATGTGCCGCCTGCAAGTGCTTAAGGAGAAAATGCATGC
CTGATTGTGTTTTTGCTCCATATTTTCCACCTGAAGAGCCTCAAAAGTTT
GTGAATGTTCACAAAATATTTGGTGCAAGCAATGTAAGCAAACTCTTAAA
CGAAGTTCTGCCTCATCAGAGGGAAGATGCAGTGAACTCTCTAGCT

Coding sequence (CDS) from alignment at drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+

>drCitSine.Jinhong.1.0.HB2g29990.1 ID=drCitSine.Jinhong.1.0.HB2g29990.1; Name=drCitSine.Jinhong.1.0.HB2g29990.1; organism=Citrus sinensis; type=CDS; length=213bp; location=Sequence derived from: drCitSine.Jinhong.1.0.HB.chr2:26792132..26793077+ (Citrus sinensis
ATGGCTTCTTCAAGCTACTCAAATGCTCCATGTGCCGCCTGCAAGTGCTT
AAGGAGAAAATGCATGCCTGATTGTGTTTTTGCTCCATATTTTCCACCTG
AAGAGCCTCAAAAGTTTGTGAATGTTCACAAAATATTTGGTGCAAGCAAT
GTAAGCAAACTCTTAAACGAAGTTCTGCCTCATCAGAGGGAAGATGCAGT
GAACTCTCTAGCT

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB