Luvunga scandens cv. SYT genome v1.0
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Overview
About the assembly For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. This data was originally downloaded from the Citrus Pan-genome to Breeding Database. This data is also on NCBI under BioProject PRJNA782409 and the assembly accession number is GCA_030449905.1. The listed BioSample isolate designation is SYT. Assembly metrics
Assembly
The Luvunga scandens cv. SYT genome v1.0 assembly files are available in GFF3 and FASTA format. Downloads
Gene Predictions
The Luvunga scandens cv. SYT v1.0 genome gene prediction files are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotations for the Luvunga scandens cv. SYT genome v1.0 are available for download below. The Luvunga scandens cv. SYT genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Luvunga scandens cv. SYT genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
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