Murraya paniculata genome v1.0 (Kunming)

Overview


Analysis Name	Murraya paniculata genome v1.0 (Kunming)
Method	Nanopore, Hi-C (Assembled with Canu, NextDenovo)
Source	Kunming Institute of Botany, Chinese Academy of Sciences
Date performed	2024-01-22

About the assembly

For this genome, please cite Yang et al, Chromosome-level genome assembly of Murraya paniculata sheds light on biosynthesis of floral volatiles. This data was downloaded from the National Genomics Data Center, BioProject PRJCA009823 and the assembly accession number is GWHBPAQ00000000. The listed BioSample cultivar designation is not provided.

Assembly metrics

Assembly size	217 Mb
Number of scaffolds	25
N50	23,920,500 bp
Predicted transcripts	23,548
Annotated genes	23,548
Assembly BUSCO score (embryophyta_odb10)	98.5%
Annotation BUSCO score (embryophyta_odb10)	98.4%

Assembly

The Murraya paniculata cv. Kunming genome v1.0 assembly files are available in GFF3 and FASTA format.

Downloads

Chromosomes (FASTA file)

Mp_Kunming_v1.0.fasta.gz

Gene Predictions

The Murraya paniculata cv. Kunming v1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences (FASTA file)	Mp_Kunming_v1.0.proteins.fasta.gz
CDS (FASTA file)	Mp_Kunming_v1.0.cds.fasta.gz
Genes (GFF3 file)	Mp_Kunming_v1.0.genes.gff3.gz

Links

JBrowse

BLAST

Synteny

Functional Analysis

Functional annotation for the Murraya paniculata Kunming genome v1.0 are available for download below. The Murraya paniculata genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).

Downloads

GO assignments from InterProScan	Mp_Kunming_v1.0_genes2GO.xlsx.gz
IPR assignments from InterProScan	Mp_Kunming_v1.0_genes2IPR.xlsx.gz
Proteins mapped to KEGG Orthologs	Mp_Kunming_v1.0_KEGG-orthologis.xlsx.gz
Proteins mapped to KEGG Pathways	Mp_Kunming_v1.0_KEGG-pathways.xlsx.gz

Homology

Homology of the Murraya paniculata Kunming genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e^-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format.

Protein Homologs

C. ichangensis Kunming v1.0 proteins with arabidopsis (Araport11) homologs (EXCEL file)	Mp_Kunming_v1.0_vs_arabidopsis.xlsx.gz
C. ichangensis Kunming v1.0 proteins with arabidopsis (Araport11) (FASTA file)	Mp_Kunming_v1.0_vs_arabidopsis_hit.fasta.gz
C. ichangensis Kunming v1.0 proteins without arabidopsis (Araport11) (FASTA file)	Mp_Kunming_v1.0_vs_arabidopsis_noHit.fasta.gz
C. ichangensis Kunming v1.0 proteins with SwissProt homologs (EXCEL file)	Mp_Kunming_v1.0_vs_swissprot.xlsx.gz
C. ichangensis Kunming v1.0 proteins with SwissProt (FASTA file)	Mp_Kunming_v1.0_vs_swissprot_hit.fasta.gz
C. ichangensis Kunming v1.0 proteins without SwissProt (FASTA file)	Mp_Kunming_v1.0_vs_swissprot_noHit.fasta.gz
C. ichangensis Kunming v1.0 proteins with TrEMBL homologs (EXCEL file)	Mp_Kunming_v1.0_vs_trembl.xlsx.gz
C. ichangensis Kunming v1.0 proteins with TrEMBL (FASTA file)	Mp_Kunming_v1.0_vs_trembl_hit.fasta.gz
C. ichangensis Kunming v1.0 proteins without TrEMBL (FASTA file)	Mp_Kunming_v1.0_vs_trembl_noHit.fasta.gz