Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0
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Overview
About the assembly For this genome, please cite Zhu C, You C, Wu P, Huang Y, Zhang R, Fan Z, Yu C, Gong J, Hu X, Zeng J, Sun X. The gap-free genome and multi-omics analysis of Citrus reticulata ‘Chachi’ reveal the dynamics of fruit flavonoid biosynthesis. Horticulture Research. 2024 Aug;11(8):uhae177. This data was originally downloaded from Figshare. Assembly metrics
Assembly
The Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0 assembly file is available in FASTA format. Downloads
Gene Predictions
The Citrus reticulata 'Chachi' cv. Dazhongyoushen v1.0 genome gene prediction files are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotation for the Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0 are available for download below. The Citrus reticulata genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2024-03), and UniProtKB/TrEMBL (Release 2024-03) databases. The best hit reports are available for download in Excel format. Protein Homologs
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