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Overview
| Analysis Name | Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0 |
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| Method | Oxford Nanopore (Assembly with NextDenovo v2.5.2) |
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| Source | Figshare |
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| Date performed | 2024-10-30 |
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About the assembly
For this genome, please cite Zhu C, You C, Wu P, Huang Y, Zhang R, Fan Z, Yu C, Gong J, Hu X, Zeng J, Sun X. The gap-free genome and multi-omics analysis of Citrus reticulata ‘Chachi’ reveal the dynamics of fruit flavonoid biosynthesis. Horticulture Research. 2024 Aug;11(8):uhae177. This data was originally downloaded from Figshare.
Assembly metrics
| Assembly size |
313 Mb |
| Number of scaffolds |
9 |
| N50 |
32,187,089 bp |
| Predicted transcripts |
34,097 |
| Annotated genes |
34,097 |
| Assembly BUSCO score (embryophyta_odb10) |
99.2% |
| Annotation BUSCO score (embryophyta_odb10) |
98.4% |
Assembly
The Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0 assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) |
Cr_Chachi_v1.chr.fasta.gz |
Gene Predictions
The Citrus reticulata 'Chachi' cv. Dazhongyoushen v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
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