FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.139e-20 Identity = 65/212 (30.66%), Postives = 105/212 (49.53%), Query Frame = 2 Query: 281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFGGGCGS 913 R+L++G+L + E I +F G S K+I +N + Y F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A + T Q + ++ P N T++ GG S Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS 214
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.590e-19 Identity = 67/215 (31.16%), Postives = 108/215 (50.23%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERRQD-----DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGENDPN 880 L++GDL P +++ + I+ GE ++ +++ N N ++GY F++F S A L NG +P+ + +LNWAT G + +IFVGDLA +VT+ L E F Y+S AK+V D+ TG SKGYGFV+F + EQ +++EM GV + R +++ P + + QQ+ + S N+ N Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQ-----QQHVSGNNDYNRSSSSLNNEN 264
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 95.9005 bits (237), Expect = 3.543e-19 Identity = 58/189 (30.69%), Postives = 101/189 (53.44%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++GDL+P + E+++ IF G S +V R+ T S GY ++ F H A + ++ N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ + +K+ TD G+SKG+GFV F +E ++ +NG+L + + + +AP ++K Q + KA Y N Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN 220
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.894e-19 Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 2 Query: 281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFGGGCGS 913 ++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A Y+ T Q + ++ PNN T++ GG S Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS 223
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18 Identity = 67/227 (29.52%), Postives = 106/227 (46.70%), Query Frame = 2 Query: 281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR--------NKQTNFS-------EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFGGGCGS 913 R+L++G+L + E I +F G S K+I N FS + Y F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A + T Q + ++ P N T++ GG S Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIAS 231
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18 Identity = 64/222 (28.83%), Postives = 109/222 (49.10%), Query Frame = 2 Query: 281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFGGGCGS 913 ++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A Y+ T Q + ++ P+N T++ GG S Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS 223
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18 Identity = 57/189 (30.16%), Postives = 102/189 (53.97%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++GDL P + E+++ IF G S +V R+ T S GY ++ F H AA+ ++ N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ ++ +KV TD TG+SKG+G+V F ++ ++ +NG+L + + + + P +KK + + KA + N Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTN 217
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 9.649e-17 Identity = 67/208 (32.21%), Postives = 102/208 (49.04%), Query Frame = 2 Query: 281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQY-QKATYQNTQ--GSQGENDPNNTTI 892 R L++G+L + E + F G + K++ +K N + Y F+E+ A LQT NG Q+ E N ++NWA + + + DD F +FVGDL +V D L+ F+ S + G V+ D TG S+GYGFV F + + +M M G + RP+RI AA + Y Q+ Y N G + N+ NN + Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKINWA-FQSQQSSSDD--TFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNM 274
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.820e-15 Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 784 L++G+L ++ +A IF G +VI N++T+ S G+GF+ + AE+ ++ NG M + A G+ ER R D P ++VG+L DV L++ F + + V A+VV+DR TGRS+G+GFV ESE ++ ++G R +R+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |