FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.139e-20
Identity = 65/212 (30.66%), Postives = 105/212 (49.53%), Query Frame = 2
Query:  281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFGGGCGS 913
            R+L++G+L   + E  I  +F   G   S K+I    +N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++ D    F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F ++ +   ++  M G     R +R   A  K  A     +  T Q   +    ++ P N T++ GG  S
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS 214          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.590e-19
Identity = 67/215 (31.16%), Postives = 108/215 (50.23%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERRQD-----DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGENDPN 880
            L++GDL P  +++ +  I+   GE  ++ +++ N   N           ++GY F++F S   A   L   NG  +P+   +  +LNWAT               G + +IFVGDLA +VT+  L E F   Y+S   AK+V D+ TG SKGYGFV+F +  EQ  +++EM GV  + R +++ P + +     QQ+        + S   N+ N
Sbjct:   56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQ-----QQHVSGNNDYNRSSSSLNNEN 264          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 3.543e-19
Identity = 58/189 (30.69%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++GDL+P + E+++  IF   G   S +V R+  T  S GY ++ F  H A  + ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+  +  +K+ TD   G+SKG+GFV F +E     ++  +NG+L + + + +AP  ++K    Q +  KA Y N
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN 220          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.894e-19
Identity = 65/222 (29.28%), Postives = 109/222 (49.10%), Query Frame = 2
Query:  281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFGGGCGS 913
            ++L++G+L   + E+ I  +F   G   + K+I +   N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++          Q     F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F ++ +   ++ +M G     R +R   A  K  A    Y+  T Q +      ++ PNN T++ GG  S
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS 223          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18
Identity = 67/227 (29.52%), Postives = 106/227 (46.70%), Query Frame = 2
Query:  281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR--------NKQTNFS-------EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFGGGCGS 913
            R+L++G+L   + E  I  +F   G   S K+I         N    FS       + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++ D    F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F ++ +   ++  M G     R +R   A  K  A     +  T Q   +    ++ P N T++ GG  S
Sbjct:    9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIAS 231          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18
Identity = 64/222 (28.83%), Postives = 109/222 (49.10%), Query Frame = 2
Query:  281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFGGGCGS 913
            ++L++G+L   + E+ I  +F   G   + K+I +   N  + Y F+EF  H  A   L   NG ++   E   ++NWAT  + +++          Q     F +FVGDL+ ++T   ++  F A +  +  A+VV D  TG+SKGYGFV F ++ +   ++ +M G     R +R   A  K  A    Y+  T Q +      ++ P+N T++ GG  S
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS 223          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18
Identity = 57/189 (30.16%), Postives = 102/189 (53.97%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++GDL P + E+++  IF   G   S +V R+  T  S GY ++ F  H AA+  ++  N T  P   +  R+ W+      R++  G    IF+ +L  D+ +  L +TF +V+ ++  +KV TD  TG+SKG+G+V F ++     ++  +NG+L + + + + P  +KK    + +  KA + N
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTN 217          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 9.649e-17
Identity = 67/208 (32.21%), Postives = 102/208 (49.04%), Query Frame = 2
Query:  281 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQY-QKATYQNTQ--GSQGENDPNNTTI 892
            R L++G+L   + E  +   F   G   + K++ +K  N +  Y F+E+     A   LQT NG Q+   E N  ++NWA + + +   DD   F +FVGDL  +V D  L+  F+   S + G  V+ D  TG S+GYGFV F  + +   +M  M G   + RP+RI  AA +       Y Q+  Y N    G +  N+ NN  +
Sbjct:   75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI---ENNIVKINWA-FQSQQSSSDD--TFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNM 274          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.820e-15
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 784
            L++G+L   ++   +A IF   G     +VI N++T+ S G+GF+   +   AE+ ++  NG  M   +       A  G+ ER  R D  P   ++VG+L  DV    L++ F + +  V  A+VV+DR TGRS+G+GFV    ESE   ++  ++G     R +R+
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            P A S  + SL++GDL P + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +    ++K
Sbjct:    3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TIAR_HUMAN7.139e-2030.66Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
NAM8_YEAST1.590e-1931.16Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
PABP_YEAST3.543e-1930.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIA1_MOUSE7.894e-1929.28Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIAR_MOUSE3.000e-1829.52Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_HUMAN3.000e-1828.83Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PABP_CANGA3.000e-1830.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PUB1_YEAST9.649e-1732.21Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
ROC1_SPIOL1.820e-1532.1428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
PABPB_XENLA5.295e-1531.15Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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