FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.768e-37
Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAA-----TGQQYQKATYQNTQGSQG--ENDPNNTTIFGGGCGS 913
            +LW+GDL+PWM+ ++I  ++    E V+ KV+R+K ++      Y F++F S AAAER L  +N T +P     F+LNWAT G  +        P+F+IFVGDL     D  L  TFR++Y S   AK++ D  TG S+ YGFVRF  E EQ  ++  M G LC  RP+RI+ A+ K  A     +       +  N Q +Q     DP NTT+F GG  S
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLAS 306          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.583e-35
Identity = 82/177 (46.33%), Postives = 116/177 (65.54%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE  G +   ++P+R++ A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.068e-35
Identity = 82/177 (46.33%), Postives = 116/177 (65.54%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE  G +   ++P+R++ A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.527e-35
Identity = 82/177 (46.33%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE  G +    +P+R++ A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35
Identity = 81/177 (45.76%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ TYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE  G +   ++P+R++ A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35
Identity = 82/177 (46.33%), Postives = 114/177 (64.41%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D  TG SKGYGFV+F DE EQ R++TE  G +    +P+R++ A  K
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.986e-34
Identity = 84/206 (40.78%), Postives = 121/206 (58.74%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE-MNGVLCSTRPMRIAPAATK-KAATGQQYQKATYQNTQGSQGENDPNNT 886
            SLW+GDL P+M+E++I   F   GE   G K+I ++ T  S GY F+E    A+ +R +Q  NG  +P +   + F+LN+ATYG   +R + GP+F++FVGDL ++V DY L + F   + S KGAKVVTD   G S+GYGFV+F DE+EQ +++ E  N      +P+RI+ A  K   A+    Q  TY      Q    P N+
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNS 208          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.482e-33
Identity = 72/190 (37.89%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  245 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAA 811
            YG + D +     +LW+G+L+PW+ E++I  ++   G+ V  K+IRN+ T  + GY F+EF S   A   + + N   +P T   F+LNWA+ G   E+      +++IFVGDL+ +V ++ +   F + Y+S K AK++TD  T  S+GYGFVRF DE++Q  ++ EM G +C  RP+R+  A  K  A
Sbjct:   81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.899e-23
Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 2
Query:  278 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802
            + SLW+G+L+P+M+E +I   F   GE  V  ++IR+K T  + GYGF+E     A ER L+  NG  +P  +  + F+L+ + YG    +Q +   F++FV DL  DV D +L E F   +SS    K+V D   G SK  GFV F  E EQ R++ ++ G      + +R++ A+++
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.466e-20
Identity = 78/276 (28.26%), Postives = 119/276 (43.12%), Query Frame = 2
Query:  260 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK------AATGQQYQKATYQNTQGSQGEND 874
            + S++  R+LW+GDL P  +E+ I  I+    + V  K+IR K+              N SE                                        GY F+EF +   A+  L             T N    P+ ++ FRLNWA+    +      P+F++FVGDL+   T+  L   F+  + SVK  +V+TD  TG S+ +GFVRFGDE E+ R++ EM+G     R +R+A A  +           QQ Q+   Q+ Q  Q +N+
Sbjct:   27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNN 302          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
CSX1_SCHPO3.768e-3739.82RNA-binding post-transcriptional regulator csx1 OS... [more]
TSAP1_BOVIN1.583e-3546.33tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_HUMAN2.068e-3546.33tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_RAT3.527e-3546.33tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB6.016e-3545.76tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE6.016e-3546.33tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSP1L_DANRE2.986e-3440.78tRNA selenocysteine 1-associated protein 1-like OS... [more]
YG41_SCHPO1.482e-3337.89Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE6.899e-2335.75tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NGR1_YEAST5.466e-2028.26Negative growth regulatory protein NGR1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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