FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.768e-37 Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAA-----TGQQYQKATYQNTQGSQG--ENDPNNTTIFGGGCGS 913 +LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ Y F++F S AAAER L +N T +P F+LNWAT G + P+F+IFVGDL D L TFR++Y S AK++ D TG S+ YGFVRF E EQ ++ M G LC RP+RI+ A+ K A + + N Q +Q DP NTT+F GG S Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLAS 306
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.583e-35 Identity = 82/177 (46.33%), Postives = 116/177 (65.54%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R++ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.068e-35 Identity = 82/177 (46.33%), Postives = 116/177 (65.54%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R++ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.527e-35 Identity = 82/177 (46.33%), Postives = 115/177 (64.97%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + +P+R++ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35 Identity = 81/177 (45.76%), Postives = 115/177 (64.97%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ TYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R++ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 6.016e-35 Identity = 82/177 (46.33%), Postives = 114/177 (64.41%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY S +G KVV D TG SKGYGFV+F DE EQ R++TE G + +P+R++ A K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.986e-34 Identity = 84/206 (40.78%), Postives = 121/206 (58.74%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE-MNGVLCSTRPMRIAPAATK-KAATGQQYQKATYQNTQGSQGENDPNNT 886 SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R +Q NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + F + S KGAKVVTD G S+GYGFV+F DE+EQ +++ E N +P+RI+ A K A+ Q TY Q P N+ Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKASTYHNQNNTYNTNYQQQYYRQPYNS 208
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.482e-33 Identity = 72/190 (37.89%), Postives = 114/190 (60.00%), Query Frame = 2 Query: 245 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAA 811 YG + D + +LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+EF S A + + N +P T F+LNWA+ G E+ +++IFVGDL+ +V ++ + F + Y+S K AK++TD T S+GYGFVRF DE++Q ++ EM G +C RP+R+ A K A Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.899e-23 Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 2 Query: 278 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIAPAATK 802 + SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER L+ NG +P + + F+L+ + YG +Q + F++FV DL DV D +L E F +SS K+V D G SK GFV F E EQ R++ ++ G + +R++ A+++ Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 5.466e-20 Identity = 78/276 (28.26%), Postives = 119/276 (43.12%), Query Frame = 2 Query: 260 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-------------NFSE----------------------------------------GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK------AATGQQYQKATYQNTQGSQGEND 874 + S++ R+LW+GDL P +E+ I I+ + V K+IR K+ N SE GY F+EF + A+ L T N P+ ++ FRLNWA+ + P+F++FVGDL+ T+ L F+ + SVK +V+TD TG S+ +GFVRFGDE E+ R++ EM+G R +R+A A + QQ Q+ Q+ Q Q +N+ Sbjct: 27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAENQQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNN 302 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |