FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            G+ +++I +L   ++   +  +F   G  +S KV+ +   N S+GY ++ F S AAA R +   NG ++ + +    R  +    A E R  D   FT +FV ++  D+ D  L+E F   Y   +  KV+ D  +G+SKG+GFVR+       +++ +++G     + + +  A  K
Sbjct:  104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.058e-11
Identity = 51/204 (25.00%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM---RIAPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 886
            SL++GDL P + E+ +   F   G  +S ++ R+K T  S GY ++ +     A+R L+T N   +    +  R+ W+      R+   G    +F+ +L   + +  L   F A + ++   KV  D      KGYGFV F  +    R++  MNG+  + R +   R      ++A  G   +++T  + +  + + D   T
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEAT 198          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 47/184 (25.54%), Postives = 95/184 (51.63%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKA 835
            ++++G L   + ES +  +    G  VS  + +++ T   +G+GF+EF+    A+  ++  N  ++    +  ++N A+  A E+  D G +  IFVG+L  +V + +L +TF A    ++  K++ D  +G SKG+ F+ F        ++  MNG     R + ++  A K+ + G+++  A
Sbjct:   14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYG--KPIKVNKAS--AHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVS-YAFKRDSKGERHGTA 190          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PABP5_PONPY4.638e-1127.53Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR4.638e-1127.53Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU4.638e-1127.53Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA4.638e-1127.53Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN4.638e-1127.53Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO4.638e-1127.53Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PAP1M_HUMAN6.058e-1125.00Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
SF3B4_CAEEL7.912e-1125.54Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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