FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15 Identity = 56/211 (26.54%), Postives = 105/211 (49.76%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK----AATGQQYQKATYQNTQGSQGENDPNN 883 A+ G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F + A R +Q N +P + R+ ++ RR G IF+ +L + L +TF + + ++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + + P ++ A ++ +N S ++D N Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.915e-15 Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.031e-15 Identity = 57/183 (31.15%), Postives = 90/183 (49.18%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.180e-14 Identity = 50/174 (28.74%), Postives = 93/174 (53.45%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 SL++G+L+P + E+ + IF G S +V R+ TN S GY ++ F H A + ++ N T + + R+ W+ R++ G I++ +L + + L ETF + + ++ KV TD G S+G+GFV F +ES+ ++ ++G+L + + + +A +KK Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKG--KPCRIMWSQRDPSLRKKGSG---NIYIKNLHPAIDNKSLHETF-STFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.012e-14 Identity = 54/199 (27.14%), Postives = 98/199 (49.25%), Query Frame = 2 Query: 254 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 AP+AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 40 APNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 231
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.432e-14 Identity = 54/199 (27.14%), Postives = 96/199 (48.24%), Query Frame = 2 Query: 254 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 AP S SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 39 APSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 230
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.432e-14 Identity = 54/198 (27.27%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 P AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 234 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |