FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 4.482e-14
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            P A S  + SL++GDL   + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    IF+ +L   + +  L +TF A + ++   KVV D     SKGYGFV F  +    R++ +MNG+L + R + +    ++K
Sbjct:    3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIAPAATKKAATGQQYQKATYQN 847
            A+ D   +L +  L   M +    S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   S  T P+ +  A      + Q      YQ+
Sbjct:   33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIAPAATKKAATGQQYQKATYQN 847
            A+ D   +L +  L   M +    S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   S  T P+ +  A      + Q      YQ+
Sbjct:   45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 53/198 (26.77%), Postives = 96/198 (48.48%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            P A+     SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L A + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +    +KK    + +  KA + N
Sbjct:   44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 234          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2
Query:  266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG     +T P+ +  A      T Q      YQ+
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2
Query:  266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG     +T P+ +  A      T Q      YQ+
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2
Query:  266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847
            + D   +L +  L   M +  + S+FG  GE  S K++R+K T  S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG     +T P+ +  A      T Q      YQ+
Sbjct:   34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14
Identity = 49/174 (28.16%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            SL++GDL P + E ++  IF   G   + +V R+  T  S  Y ++ + + A AER L T N T  P   +  R+ W+      R+   G    +F+ +L   +    L +TF A + ++   KVVTD     SKG+GFV +  +    +++ ++NG++ + + + + P  + K
Sbjct:   11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVG---NVFIKNLDKGIDHKALYDTFSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14
Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  IF   G+  S +V R+  +  S GY ++ +      E+ ++  N T  P   +  R+ W+      RR  DG    IF+ +L   + +  L +TF A +  +   KV TD   G+SK +GFV +  E     ++  +NG+L + R + +    +KK    + +  KA Y N
Sbjct:   68 SLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYT--PVEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN 249          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14
Identity = 53/199 (26.63%), Postives = 97/199 (48.74%), Query Frame = 2
Query:  254 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            AP A+     SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +    +KK    + +  KA + N
Sbjct:   45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 236          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PABPA_XENLA4.482e-1430.60Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
ELAV4_RAT5.854e-1426.90ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE5.854e-1426.90ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
PABP_NEOFI7.646e-1426.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_PONAB7.646e-1426.53ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE7.646e-1426.53ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN7.646e-1426.53ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PAP1A_DICDI9.985e-1428.16Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABP_LODEL9.985e-1428.04Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC9.985e-1426.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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