FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 4.482e-14 Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G IF+ +L + + L +TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + + ++K Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14 Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIAPAATKKAATGQQYQKATYQN 847 A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A + Q YQ+ Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.854e-14 Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIAPAATKKAATGQQYQKATYQN 847 A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A + Q YQ+ Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14 Identity = 53/198 (26.77%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 P A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 234
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14 Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2 Query: 266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847 + D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+ Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14 Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2 Query: 266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847 + D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+ Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14 Identity = 52/196 (26.53%), Postives = 96/196 (48.98%), Query Frame = 2 Query: 266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847 + D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+ Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 49/174 (28.16%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 SL++GDL P + E ++ IF G + +V R+ T S Y ++ + + A AER L T N T P + R+ W+ R+ G +F+ +L + L +TF A + ++ KVVTD SKG+GFV + + +++ ++NG++ + + + + P + K Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVG---NVFIKNLDKGIDHKALYDTFSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + IF G+ S +V R+ + S GY ++ + E+ ++ N T P + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G+SK +GFV + E ++ +NG+L + R + + +KK + + KA Y N Sbjct: 68 SLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYT--PVEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTN 249
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 53/199 (26.63%), Postives = 97/199 (48.74%), Query Frame = 2 Query: 254 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 AP A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 236 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |