FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 53/163 (32.52%), Postives = 85/163 (52.15%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772 SL+ GDL P + E+++ +F H VS +V R+ Q S GY +I F + A R ++ N T P ++ R+ + R G IF+ +L A + + L ETF + + ++ KV D TGRSKGYGFV+F E ++ ++NG+L + + Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 2 Query: 278 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772 + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + ++ KVV D S+GYGFV F + R++ MNG+L + R Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166 HSP 2 Score: 71.2478 bits (173), Expect = 9.346e-12 Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832 M++ + IF G +S KV+ + T S G+GF+ + +H A++ + NG ++ E+ L + R + ++V +L + D L++ F + Y ++ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ +A A K KA QY + Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.985e-14 Identity = 52/197 (26.40%), Postives = 96/197 (48.73%), Query Frame = 2 Query: 266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRIAPAATKKAATGQQYQKATYQNT 850 + D +L + L M + S+FG GE S K++R+K T S GYGF+ +V A++ + T NG ++ + + ++++A + R D ++V L + +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG L ++ P+ + A TGQ YQ T Sbjct: 29 ADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTT 217
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.304e-13 Identity = 54/165 (32.73%), Postives = 82/165 (49.70%), Query Frame = 2 Query: 278 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772 + SL+IGDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + + R+ W+ G R+ G +F+ +L + + L +TF A + + KVV D S+GYGFV F + R++ MNG+L + R Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13 Identity = 51/189 (26.98%), Postives = 94/189 (49.74%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A ++ +Q N ++ + R+ W+ R++ G IF+ +L + + L ETF + + V KV D G S+G+GFV F +ES+ ++ +NG+L + + +A KK + + KA + N Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTN 232 HSP 2 Score: 70.4774 bits (171), Expect = 1.594e-11 Identity = 49/199 (24.62%), Postives = 90/199 (45.23%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDF-----------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQN 847 ++++ ++ + +F GE VS + ++ + +G+GF+ FV H AA + ++ NG + S Y E + + +F+ +L + D L+E F A Y ++ A+V+ D+ G SKG+GFV F E ++MTE N + + +P+ +A A K Q Q+ +N Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEF-APYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 427
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13 Identity = 55/184 (29.89%), Postives = 89/184 (48.37%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKA 835 SL++GDL + ES + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ RR G +F+ +L + + + +TF A + ++ KV TD G SKGYGFV F E S+ ++NG+L + + + + +K + +KA Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLV--RNKPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKA 179 HSP 2 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 55/187 (29.41%), Postives = 90/187 (48.13%), Query Frame = 2 Query: 317 EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832 ++ + F G+ S KV+ +K+ S+G+GF+ F + AAE +Q NG M E+ L ++R + ++V +L + D L+ F + Y ++ AKV+TD GRSKG+GFV F SE ++TE+NG + ++P+ +A A K KA QY + Sbjct: 195 DDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAF-SPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMR 378
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13 Identity = 52/196 (26.53%), Postives = 95/196 (48.47%), Query Frame = 2 Query: 266 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIAPAATKKAATGQQYQKATYQN 847 + D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A + Q YQ+ Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13 Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIAPAATKKAATGQQYQKATYQN 847 M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+ Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13 Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 2 Query: 251 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823 +A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +V+ AER + T NG ++ S + ++++A + + D +++ L +T +++ F + + + ++V+ D+TTG S+G F+RF SE ++T NG P P K AA Q Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSEPITVKFAANPNQ 189
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.225e-13 Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2 Query: 260 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772 +AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L T N + Q R+ W+ G R+ G IF+ +L + + L +TF + + ++ KV D S+G+GFV F +++ MNG+L + R Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTF-STFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 53/197 (26.90%), Postives = 99/197 (50.25%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832 ++++ +L ++E + +F G+ +S KV+R+ + S +GF+ F H A++ + NG ++ + ++ R N + +QD + ++V +L + D L++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +A A K KA QY + Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 384 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |