FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13 Identity = 56/215 (26.05%), Postives = 106/215 (49.30%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA---ATKKAATGQQYQKATYQNTQGSQGEN 871 P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F +H AA R +QT NG + + ++ R YGA +FT +++ + D+ D L+E F A + + KV+ D +GRS+G+GFV +G+ E ++++EMNG + R + + A +++ +++++ + QG N Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDMDDKRLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295 HSP 2 Score: 69.3218 bits (168), Expect = 3.551e-11 Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832 M++ + IF G +S KV+ + + S G+GF+ + +H A++ + NG ++ E+ L + R + ++V +L + D L++ F Y ++ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ +A A K KA QY + Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13 Identity = 49/183 (26.78%), Postives = 90/183 (49.18%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P AS+ SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + + +++ +NG+L + + + + KK Sbjct: 57 PQASA----SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13 Identity = 55/191 (28.80%), Postives = 92/191 (48.17%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKA 835 ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A AER L T N + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KVV D SKGY FV F + +++ +MNG+L + R + + ++K + KA Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187 HSP 2 Score: 68.5514 bits (166), Expect = 6.058e-11 Identity = 50/204 (24.51%), Postives = 97/204 (47.55%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832 A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H A + ++ NG ++ E+ L + R +++ +L + D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + ++P+ +A A K KA QY + Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG +RP+++ + K Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 454
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG +RP+++ + K Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 454
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG +RP+++ + K Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 460
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG +RP+++ + K Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 428
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + KK + + KA + N Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDTAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTN 237
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 50/198 (25.25%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRIAPAATKKAATGQQYQKATYQNT 850 A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ + A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A TGQ YQ++ Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSS 222
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12 Identity = 47/174 (27.01%), Postives = 87/174 (50.00%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 218 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |