FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 56/215 (26.05%), Postives = 106/215 (49.30%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA---ATKKAATGQQYQKATYQNTQGSQGEN 871
            P     G+ +++I +L   ++   +   F   G  +S KV+ ++    S GYGF+ F +H AA R +QT NG  +   +      ++ R     YGA         +FT +++ +   D+ D  L+E F A + +    KV+ D  +GRS+G+GFV +G+  E  ++++EMNG   + R + +  A     +++   +++++   +     QG N
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDMDDKRLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295          

HSP 2 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = 2
Query:  314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832
            M++  +  IF   G  +S KV+ +  +  S G+GF+ + +H  A++ +   NG ++              E+   L        + R +      ++V +L   + D  L++ F   Y ++  AKV+T+   G SKG+GFV F    E  +++TEMNG + ST+P+ +A A  K   KA    QY +
Sbjct:  202 MDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 49/183 (26.78%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            P AS+    SL++G+L P + E+ +  +F   G   S +V R+  T  S GY ++ + + A  E+ L+  N T +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A + ++   KV  D   G SKGYGFV +  +    +++  +NG+L + + + +     KK
Sbjct:   57 PQASA----SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 55/191 (28.80%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKA 835
            ASS  + SL++GDL   + E+ +   F   G  +S +V R+  T  S GY ++ F   A AER L T N   +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A + ++   KVV D     SKGY FV F  +    +++ +MNG+L + R + +    ++K    +   KA
Sbjct:    5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187          

HSP 2 Score: 68.5514 bits (166), Expect = 6.058e-11
Identity = 50/204 (24.51%), Postives = 97/204 (47.55%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK---KAATGQQYQK 832
            A +    +++I +    +++  +  +F   G+ +S KV+R+     S+G+GF+ +  H  A + ++  NG ++              E+   L        + R        +++ +L   + D  L++ F + + S+  AKV+ +   GRSKG+GFV F    E  +++TEMNG +  ++P+ +A A  K   KA    QY +
Sbjct:  185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            D  DF IF GDL  +V D +L   F    S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG    +RP+++  +  K
Sbjct:  371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 454          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            D  DF IF GDL  +V D +L   F    S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG    +RP+++  +  K
Sbjct:  371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 454          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            D  DF IF GDL  +V D +L   F    S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG    +RP+++  +  K
Sbjct:  377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 460          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  548 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            D  DF IF GDL  +V D +L   F    S +K AKV+ D+ TG++KGYGFV F D S+ +R+M EMNG    +RP+++  +  K
Sbjct:  345 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWK 428          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +     KK    + +  KA + N
Sbjct:   56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDTAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTN 237          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 50/198 (25.25%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRIAPAATKKAATGQQYQKATYQNT 850
            A+ D   +L +  L   M +    S+FG  G+  S K++R+K T  S GYGF+ +     A++ + T NG ++ +  +  ++++A   +   R     D  ++V  L   ++   +++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   L +  P+ +  A      TGQ      YQ++
Sbjct:   33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSS 222          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12
Identity = 47/174 (27.01%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + + A  ER L+  N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +    +KK
Sbjct:   52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 218          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
EPABA_XENLA6.472e-1326.05Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_MAGGR8.453e-1326.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN8.453e-1328.80Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
RBM42_RAT1.104e-1244.71RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm... [more]
RBM42_MOUSE1.104e-1244.71RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE... [more]
RBM42_HUMAN1.104e-1244.71RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_BOVIN1.104e-1244.71RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
PABP_COCIM1.104e-1226.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_HUMAN1.104e-1225.25ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PABP_ASPCL1.442e-1227.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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