FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12
Identity = 50/198 (25.25%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRIAPAATKKAATGQQYQKATYQNT 850
            A+ D   +L +  L   M +    S+FG  G+  S K++R+K T  S GYGF+ +     A++ + T NG ++ +  +  ++++A   +   R     D  ++V  L   ++   +++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG   L +  P+ +  A      TGQ      YQ++
Sbjct:   33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSS 222          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATG 817
            P+ S +    L++G+L   +    +A +F   G     +VI N++T+ S G+GF+   S   AE  ++ FN   +     N RL      A    + +       P F ++VG+L  DV +  L++ F + +  V  A+VV DR TGRS+G+GFV   D  E   +++ ++G     R +R+  A  +    G
Sbjct:  144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 328          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  557 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            DF IF GDL  +V D +L   F   Y S   AKVV D+ TG++KGYGFV F D ++ +R+M EMNG    +RP+++  +A K
Sbjct:  302 DFRIFCGDLGNEVNDDILARAFSR-YPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWK 382          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12
Identity = 53/194 (27.32%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  269 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SD   SL++G+L P + E+ +  IF   G+  S +V R+  T  S GY ++ F      E+ ++  N + +    +  R+ W+      RR  DG    IF+ +L   + +  L +TF A +  +   KV TD   G SK +GFV +        ++  +NG+L + R + +    +KK    + +  KA + N
Sbjct:   47 SDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEG--RPCRIMWSQRDPSLRRNGDG---NIFIKNLHPAIDNKALHDTFTA-FGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTN 233          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12
Identity = 54/192 (28.12%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  251 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823
            +A D   D G  +L +  L   M +  + S+F   GE  S K+IR+K    S GYGF+ +V+   AER + T NG ++ S  +  ++++A   +   +     D  +++  L   +T   +++ F + +  +  ++V+ D+TTG S+G  F+RF   SE   ++T   G      P    P   K AA   Q
Sbjct:    9 MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG---HKPPGSSEPITVKFAANPNQ 189          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  446 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            +R ++T  GT   S E    L W           +  DF IF GDL  +V D +L   F   Y S   AKV+ D+ TG++KGYGFV F D ++ +R+M EMNG    +RP+++  +  K
Sbjct:  269 KRCIRTAAGT---SWEDQSLLEW-----------ESDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWK 372          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12
Identity = 47/163 (28.83%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772
            SL++GDL P + ES++  +F       + +V R+  T+ S GY ++ F +   A R +++ N    P  ++  R+  +      R    G    +F+ +L A + +  L ETF + + ++   KV  D   GRSKGYGFV+F  E     ++ ++NG+L + +
Sbjct:   46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLN--YAPIRDRPIRIMLSNRDPSTRLSGKG---NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 46/175 (26.29%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793
            L++G+L   ++   +A +F   G     +VI N++T+ S G+GF+   +   A++ ++ ++   +     N RL      A    + +       P + I+VG++  D+ D  L++ F + +  V  A+VV DR +GRS+G+GFV    E+E   ++  ++G     R +R+  A
Sbjct:   99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDL-----NGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            SL++G+L P + E+ +  IF   G   S +V R+  T  S GY ++ F + A   R L+  N    P  E+  R+ W+      R+   G    I++ +L   + +  L +TF A +  +   K+ TD   G S+G+GFV +        ++  +NG+L + + + + P   K
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELN--YSPIKERPCRIMWSQRDPALRKTGAG---NIYIKNLDPAIDNKALHDTFSA-FGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPK 212          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ +   A  ER L   N T +    +  R+ W+      R+   G    +F+ +L + + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +    +KK    + +  KA + N
Sbjct:   43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 224          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ELAV3_MOUSE1.442e-1225.25ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ROC3_ARATH1.883e-1228.5031 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM42_DANRE1.883e-1246.34RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
PABP_DEBHA1.883e-1227.32Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_MOUSE1.883e-1228.13ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
RBM42_XENTR3.212e-1236.97RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
PABP5_ARATH3.212e-1228.83Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
ROC3_NICSY4.195e-1226.2928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP_YARLI4.195e-1227.17Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI4.195e-1226.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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