FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12 Identity = 50/198 (25.25%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 263 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRIAPAATKKAATGQQYQKATYQNT 850 A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ + A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A TGQ YQ++ Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSS 222
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12 Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATG 817 P+ S + L++G+L + +A +F G +VI N++T+ S G+GF+ S AE ++ FN + N RL A + + P F ++VG+L DV + L++ F + + V A+VV DR TGRS+G+GFV D E +++ ++G R +R+ A + G Sbjct: 144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL-----NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRG 328
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 557 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 DF IF GDL +V D +L F Y S AKVV D+ TG++KGYGFV F D ++ +R+M EMNG +RP+++ +A K Sbjct: 302 DFRIFCGDLGNEVNDDILARAFSR-YPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWK 382
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12 Identity = 53/194 (27.32%), Postives = 92/194 (47.42%), Query Frame = 2 Query: 269 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SD SL++G+L P + E+ + IF G+ S +V R+ T S GY ++ F E+ ++ N + + + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G SK +GFV + ++ +NG+L + R + + +KK + + KA + N Sbjct: 47 SDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEG--RPCRIMWSQRDPSLRRNGDG---NIFIKNLHPAIDNKALHDTFTA-FGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTN 233
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12 Identity = 54/192 (28.12%), Postives = 93/192 (48.44%), Query Frame = 2 Query: 251 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823 +A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +V+ AER + T NG ++ S + ++++A + + D +++ L +T +++ F + + + ++V+ D+TTG S+G F+RF SE ++T G P P K AA Q Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG---HKPPGSSEPITVKFAANPNQ 189
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12 Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 446 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 +R ++T GT S E L W + DF IF GDL +V D +L F Y S AKV+ D+ TG++KGYGFV F D ++ +R+M EMNG +RP+++ + K Sbjct: 269 KRCIRTAAGT---SWEDQSLLEW-----------ESDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWK 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12 Identity = 47/163 (28.83%), Postives = 84/163 (51.53%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 772 SL++GDL P + ES++ +F + +V R+ T+ S GY ++ F + A R +++ N P ++ R+ + R G +F+ +L A + + L ETF + + ++ KV D GRSKGYGFV+F E ++ ++NG+L + + Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLN--YAPIRDRPIRIMLSNRDPSTRLSGKG---NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12 Identity = 46/175 (26.29%), Postives = 89/175 (50.86%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG------PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793 L++G+L ++ +A +F G +VI N++T+ S G+GF+ + A++ ++ ++ + N RL A + + P + I+VG++ D+ D L++ F + + V A+VV DR +GRS+G+GFV E+E ++ ++G R +R+ A Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDL-----NGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12 Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 SL++G+L P + E+ + IF G S +V R+ T S GY ++ F + A R L+ N P E+ R+ W+ R+ G I++ +L + + L +TF A + + K+ TD G S+G+GFV + ++ +NG+L + + + + P K Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELN--YSPIKERPCRIMWSQRDPALRKTGAG---NIYIKNLDPAIDNKALHDTFSA-FGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPK 212
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12 Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + A ER L N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + +KK + + KA + N Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN 224 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |