FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 48/189 (25.40%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  +F   G   S +V R+  T  S GY ++ + S +  E+ L+  N T +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A + ++   KV  D   G SKGYGFV +  +    +++  +N +L + + + +     KK    + +  KA + N
Sbjct:   66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 247          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 49/189 (25.93%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  +F   G+  S +V R+  T  S GY ++ + S    E+ L+  N T +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A + ++   KV  D   G SKGYGFV +        ++  +NG+L + + + +     KK    + +  KA + N
Sbjct:   49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDHAIDNKALHDTF-AAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTN 230          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 47/174 (27.01%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            SL++G+L P + E+ +  IF   G   S +V R+  T  S GY ++ +++ A  ER L+  N + +    Q+ R+ W+      R+   G    IF+ +L   + +  L +TF A +  +   KV TD   G+S+G+ FV +        ++  +NG+L + + + +     KK
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKG--QSCRIMWSQRDPALRKTGQG---NIFIKNLDQSIDNKALHDTF-AAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKK 213          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            SL++G+L P + E+ +  IF   G+  S +V R+  +  S GY ++ +  +   E+ ++  N    P   +  R+ W+      RR  DG    IF+ +L   + +  L +TF A +  +   KV TD   G+SK +GFV +        ++  +NG+L + R + +    +KK    + +  KA + N
Sbjct:   53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELN--YNPIEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN 234          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12
Identity = 45/202 (22.28%), Postives = 99/202 (49.01%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA-TYGAGERRQDDG-----PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGEN 871
            ++++G L   +++ ++   F H G  +  +VI  + T+ S GYG+++F + + AE+ +Q   G ++     N  ++ +   G  +R +  G     P  T+F+G+L+ +     + E F A +  V   ++ T   T + KG+G+V+F +  +  +++  + G     RP+R+  ++ +    G +     +    G +G N
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGN 369          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP------DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 784
            L++G+L   ++   +A +F   G     +VI N+ T+ S G+GF+   +   AE+ ++ +N   +     N RL      A    + + P       + I+VG++   + D  L++ F + +  V  A+VV DR TGRS+G+GFV    E+E   ++  ++G     R +R+
Sbjct:  138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDV-----NGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 55/199 (27.64%), Postives = 92/199 (46.23%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793
            L++G+L   ++ + +A +F   G     +VI +K T  S G+GF+   +    E   Q FNG ++            P+  +N          ++YG G   +D    F              ++VG+L+  V D  L+E F +   +V  AKVV DR +GRS+G+GFV +    E   ++  +NGV    R +R++ A
Sbjct:   89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 48/174 (27.59%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            SL++G+L P + E+ +  IF   G   S +V R+  T  S GY ++ F++ A  ER ++  N + +    +  R+ W+      RR   G    IF+ +L A + +  L +TF A + ++   KV T+ T   S GYGFV +        ++  +NG+L + + + +     +K
Sbjct:   48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLI--RNRPCRIMWSQRDPALRRTGQG---NIFIKNLDAGIDNKALHDTF-AAFGNILSCKVATNET--GSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK 213          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 58/228 (25.44%), Postives = 103/228 (45.18%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN---------WATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFGGGCG 910
            P   S+   ++++G L   +++ ++   F   G  V  +VI + Q+  S+GYG+++F +  AA+  +      ++     N  L+         +A   AG    Q   P  T+FVG+L+ + T+  L   F      ++  ++ TD  +GR KG+G+V F D  +  +   EMNG   + RP R+   +T +   G +  +  +    G  G         FGGG G
Sbjct:  255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGC-GDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCRL-DFSTPRTGGGSRGGRGGFGGRGGFGGRGG------FGGGRG 473          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12
Identity = 52/192 (27.08%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-------------PSTEQNF----RLNWATYGAGERR---QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            L++G+L   ++ + +A +F   G     +VI +K T  S G+GF+   S +  E   Q FNG ++             P  E  F    R ++ + G+G         G    ++VG+L+  V D  L+  F +    V  A+V+ DR +GRSKG+GFV +    E   ++  ++G     R +R++ A  +
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PABP_CHAGB4.195e-1225.40Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PHANO5.479e-1225.93Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE5.479e-1227.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL5.479e-1226.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NSR1_YEAST5.479e-1222.28Nuclear localization sequence-binding protein OS=S... [more]
ROC4_NICSY7.156e-1227.3331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY7.156e-1227.6429 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
PABP_USTMA7.156e-1227.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GAR2_SCHPO7.156e-1225.44Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
ROC1_ARATH9.346e-1227.08Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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