FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12 Identity = 48/189 (25.40%), Postives = 91/189 (48.15%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + +F G S +V R+ T S GY ++ + S + E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + + +++ +N +L + + + + KK + + KA + N Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTN 247
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 49/189 (25.93%), Postives = 90/189 (47.62%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + S E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + + KK + + KA + N Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDHAIDNKALHDTF-AAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTN 230
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 47/174 (27.01%), Postives = 86/174 (49.43%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 SL++G+L P + E+ + IF G S +V R+ T S GY ++ +++ A ER L+ N + + Q+ R+ W+ R+ G IF+ +L + + L +TF A + + KV TD G+S+G+ FV + ++ +NG+L + + + + KK Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKG--QSCRIMWSQRDPALRKTGQG---NIFIKNLDQSIDNKALHDTF-AAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKK 213
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 SL++G+L P + E+ + IF G+ S +V R+ + S GY ++ + + E+ ++ N P + R+ W+ RR DG IF+ +L + + L +TF A + + KV TD G+SK +GFV + ++ +NG+L + R + + +KK + + KA + N Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELN--YNPIEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN 234
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.479e-12 Identity = 45/202 (22.28%), Postives = 99/202 (49.01%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA-TYGAGERRQDDG-----PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGEN 871 ++++G L +++ ++ F H G + +VI + T+ S GYG+++F + + AE+ +Q G ++ N ++ + G +R + G P T+F+G+L+ + + E F A + V ++ T T + KG+G+V+F + + +++ + G RP+R+ ++ + G + + G +G N Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGN 369
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP------DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 784 L++G+L ++ +A +F G +VI N+ T+ S G+GF+ + AE+ ++ +N + N RL A + + P + I+VG++ + D L++ F + + V A+VV DR TGRS+G+GFV E+E ++ ++G R +R+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDV-----NGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 55/199 (27.64%), Postives = 92/199 (46.23%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793 L++G+L ++ + +A +F G +VI +K T S G+GF+ + E Q FNG ++ P+ +N ++YG G +D F ++VG+L+ V D L+E F + +V AKVV DR +GRS+G+GFV + E ++ +NGV R +R++ A Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 48/174 (27.59%), Postives = 86/174 (49.43%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 SL++G+L P + E+ + IF G S +V R+ T S GY ++ F++ A ER ++ N + + + R+ W+ RR G IF+ +L A + + L +TF A + ++ KV T+ T S GYGFV + ++ +NG+L + + + + +K Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLI--RNRPCRIMWSQRDPALRRTGQG---NIFIKNLDAGIDNKALHDTF-AAFGNILSCKVATNET--GSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK 213
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12 Identity = 58/228 (25.44%), Postives = 103/228 (45.18%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN---------WATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFGGGCG 910 P S+ ++++G L +++ ++ F G V +VI + Q+ S+GYG+++F + AA+ + ++ N L+ +A AG Q P T+FVG+L+ + T+ L F ++ ++ TD +GR KG+G+V F D + + EMNG + RP R+ +T + G + + + G G FGGG G Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGC-GDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCRL-DFSTPRTGGGSRGGRGGFGGRGGFGGRGG------FGGGRG 473
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12 Identity = 52/192 (27.08%), Postives = 90/192 (46.88%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-------------PSTEQNF----RLNWATYGAGERR---QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 L++G+L ++ + +A +F G +VI +K T S G+GF+ S + E Q FNG ++ P E F R ++ + G+G G ++VG+L+ V D L+ F + V A+V+ DR +GRSKG+GFV + E ++ ++G R +R++ A + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |