FC878337

Overview
NameFC878337
Unique NameFC878337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 760
            SL++GDL   + E  +   F   G  +S ++ R++ T  S GY ++ F+  A A++ L T N   +    ++ RL W+   A  RR   G    +F+ +L   + +  L E F A +  +  +KV++D     SKGY FV F ++S   R++ EMNG L
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHFSA-FGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKL 161          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12
Identity = 46/169 (27.22%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  251 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 754
            V  + + D   +L +  L   M +  + S+FG  GE  S K++R+K T   S GYGF+ ++    AE+ + T NG ++ +  +  ++++A   +   R     D  ++V  L   +T   L++ F + Y  +  ++++ D+ TG S+G GF+RF    E   ++  +NG
Sbjct:   56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11
Identity = 49/183 (26.78%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823
            G  +L +  L   M +  + S+F   GE  S K+IR+K    S GYGF+ +++   AER + T NG ++ S  +  ++++A         +   D  +++  L   +T   +++ F   +  +  ++V+ D+ TG S+G  F+RF   SE   ++   NG      P    P   K AA   Q
Sbjct:   18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS--KTIKVSFA-----RPSSETIKDANLYISGLPRTMTQKDVEDMF-LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAANPNQ 189          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.082e-11
Identity = 49/200 (24.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-------------DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQN 847
            L++G+L   M  S ++ IF   G   + +++ ++ T+ S G+ F+   S   A+  ++ F+G+Q+    +  ++N+     G  R+              D P   ++V +L+  +T   L++ F A       AKV+ DR++GRS+G+GF+ F        ++  MN V    RP+R+  A  K   +     + + +N
Sbjct:  116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGG--RTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPH-KLYVANLSWALTSQGLRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPEN 311          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  446 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802
            +R ++T  GT   S E    L W           +  DF IF GDL  +V D +L   F   Y S   AKV+ D+ TG++KGYGFV F D ++ +R+  EMNG    +RP+++  +  K
Sbjct:  269 KRCIRTAAGT---SWEDQSLLEW-----------EPDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKLRKSQWK 372          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 48/198 (24.24%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847
            P  ++    SL++G+L P + E+ +  +F   G   S +V R+  T  S GY ++ F +    E+ L   N T +    +  R+ W+      R+   G    +F+ +L   + +  L +TF A +  +   KV  D   G +KGYGFV F        ++  +NG+L + + + +    +++    + +  KA + N
Sbjct:   72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTG---NVFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTN 262          

HSP 2 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 47/200 (23.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:  260 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-------------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ 820
            +A      +++I +L   + E   + +FG  GE  S  ++++ Q +   G+GF+ + +H  A++ +   N  +                 E+  R  +      +  +  G +  +F+ +L  +V D  L+  F A + ++  AK++TD   G+SKG+GFV +    E  +++TEMN  + + +P+ +A A  K+    Q
Sbjct:  254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN--LFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQ 448          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 51/183 (27.87%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            P   S    SL++GDL P + E+ +   F   G  +S ++ R+  T+ S  Y ++ F     AE  L T N   +    +  R+ W+      R+   G    IFV +L   + +  L +T  A + ++    VV D     SKGYGFV F       R++ +MNG+L + R + +    ++K
Sbjct:    3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177          

HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805
            M++  +  +FG  G  +S KV+ + ++  S+G+GF+ F  H  A++ +   NG ++              E+   L        + R        ++V +L   + D  L++ F + + ++  AKV+ +   GRSKG+GFV F    E  +++TEMNG + +T+P+ +A A  K+
Sbjct:  202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 48/183 (26.23%), Postives = 80/183 (43.72%), Query Frame = 2
Query:  275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823
            G  +L +  L   M +  + S+F   GE  S K+IR+K    S GYGF+ +++   AER + T NG ++ S                   +   D  +++  L   +T   +++ F   +  +  ++V+ D+ TG S+G  F+RF   SE   ++   NG      P    P   K AA   Q
Sbjct:   18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-------KTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMF-LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAANPNQ 189          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 53/199 (26.63%), Postives = 92/199 (46.23%), Query Frame = 2
Query:  287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793
            L++G+L   ++ + +A +F   G     +VI +K +  S G+GF+   +    E   Q FNG ++            P+  +N          ++YG G   +D    F              ++VG+L+  V D  L+E F +   +V  AKVV DR +GRS+G+GFV +    E   ++  +NG+    R +R++ A
Sbjct:   90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284          
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 53/213 (24.88%), Postives = 95/213 (44.60%), Query Frame = 2
Query:  254 APDASSDG-----IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAP--AATKKAATGQQYQKATYQNTQGSQGEN 871
            A DASS G       SL++GDL P + E  +   F       S ++ ++  +  S  YG+  F+S   A   ++  N + +    +  R+ W+      RR   G    +FV +L   VT+ VLQ+ F+  + ++   KV T    G+S+GYGFV+F  E     ++  +N  + + + + +      T +    ++Y     +N      E+
Sbjct:   10 AADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMFKK-FGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSED 215          
The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PAB4L_HUMAN9.346e-1231.45Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
ELAV2_XENLA9.346e-1227.22ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELV1B_XENLA1.594e-1126.78ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ROC5_NICSY2.082e-1124.5033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM42_XENLA2.719e-1136.13RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]
PABP_SCHPO2.719e-1124.24Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN3.551e-1127.87Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
ELAV1_XENTR3.551e-1126.23ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ROC2_NICPL4.638e-1126.6331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABPX_ARATH4.638e-1124.88Probable polyadenylate-binding protein At2g36660 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA91BA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bp
GTTTACCCTCTTCATCGGATCTCGAAAATCAATTAATAACGCTTTACCTT
TTGATATAACGATGATGCAACAACCGCCATCACAGCCTTCCGATCAGACT
AGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCGTATCAACAGCAGTC
GCAGCAGCAGCAACAACAACATCAAACTCCGGTGCCACCTCCGGTTGGAT
GGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGACGCAGCCCTACGGT
GTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCTTTGTGGATCGGAGA
CTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAGCATCTTCGGCCATA
CTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACAAGCAAACAAATTTT
TCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCATGCTGCTGCAGAGAG
GGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAGCACTGAGCAAAACT
TCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGAGGCGTCAAGATGAT
GGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCTGCCGATGTAACTGA
CTATGTGCTACAAGAAACATTTAGAGCTGTCTACTCGTCAGTGAAGGGTG
CTAAAGTGGTCACTGATAGAACCACTGGACGCTCTAAGGGGTATGGTTTT
GTGAGATTTGGGGATGAAAGTGAACAATTGCGTTCCATGACCGAAATGAA
TGGCGTGCTCTGCTCTACTAGACCTATGCGGATTGCGCCAGCTGCCACCA
AGAAAGCTGCCACTGGCCAGCAATATCAGAAAGCTACTTATCAAAATACC
CAAGGAAGCCAGGGCGAGAATGATCCAAATAATACAACAATATTTGGTGG
GGGGTGTGGATCCTAGTGTTACAGATGACATTTTGAA
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