FC878337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12 Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 2 Query: 284 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 760 SL++GDL + E + F G +S ++ R++ T S GY ++ F+ A A++ L T N + ++ RL W+ A RR G +F+ +L + + L E F A + + +KV++D SKGY FV F ++S R++ EMNG L Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHFSA-FGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKL 161
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12 Identity = 46/169 (27.22%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 251 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 754 V + + D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11 Identity = 49/183 (26.78%), Postives = 86/183 (46.99%), Query Frame = 2 Query: 275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823 G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER + T NG ++ S + ++++A + D +++ L +T +++ F + + ++V+ D+ TG S+G F+RF SE ++ NG P P K AA Q Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS--KTIKVSFA-----RPSSETIKDANLYISGLPRTMTQKDVEDMF-LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAANPNQ 189
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.082e-11 Identity = 49/200 (24.50%), Postives = 95/200 (47.50%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-------------DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQYQKATYQN 847 L++G+L M S ++ IF G + +++ ++ T+ S G+ F+ S A+ ++ F+G+Q+ + ++N+ G R+ D P ++V +L+ +T L++ F A AKV+ DR++GRS+G+GF+ F ++ MN V RP+R+ A K + + + +N Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGG--RTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPH-KLYVANLSWALTSQGLRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPEN 311
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11 Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2 Query: 446 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATK 802 +R ++T GT S E L W + DF IF GDL +V D +L F Y S AKV+ D+ TG++KGYGFV F D ++ +R+ EMNG +RP+++ + K Sbjct: 269 KRCIRTAAGT---SWEDQSLLEW-----------EPDDFRIFCGDLGNEVNDDILARAFSR-YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKLRKSQWK 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11 Identity = 48/198 (24.24%), Postives = 91/198 (45.96%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ-QYQKATYQN 847 P ++ SL++G+L P + E+ + +F G S +V R+ T S GY ++ F + E+ L N T + + R+ W+ R+ G +F+ +L + + L +TF A + + KV D G +KGYGFV F ++ +NG+L + + + + +++ + + KA + N Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTG---NVFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTN 262 HSP 2 Score: 68.1662 bits (165), Expect = 7.912e-11 Identity = 47/200 (23.50%), Postives = 95/200 (47.50%), Query Frame = 2 Query: 260 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST-------------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQ 820 +A +++I +L + E + +FG GE S ++++ Q + G+GF+ + +H A++ + N + E+ R + + + G + +F+ +L +V D L+ F A + ++ AK++TD G+SKG+GFV + E +++TEMN + + +P+ +A A K+ Q Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN--LFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQ 448
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11 Identity = 51/183 (27.87%), Postives = 84/183 (45.90%), Query Frame = 2 Query: 257 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 P S SL++GDL P + E+ + F G +S ++ R+ T+ S Y ++ F AE L T N + + R+ W+ R+ G IFV +L + + L +T A + ++ VV D SKGYGFV F R++ +MNG+L + R + + ++K Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177 HSP 2 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = 2 Query: 314 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKK 805 M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++ E+ L + R ++V +L + D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ +A A K+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11 Identity = 48/183 (26.23%), Postives = 80/183 (43.72%), Query Frame = 2 Query: 275 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPAATKKAATGQQ 823 G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER + T NG ++ S + D +++ L +T +++ F + + ++V+ D+ TG S+G F+RF SE ++ NG P P K AA Q Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-------KTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMF-LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAANPNQ 189
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 53/199 (26.63%), Postives = 92/199 (46.23%), Query Frame = 2 Query: 287 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM------------PSTEQNFRLNW-----ATYGAGERRQDDGPDF-------------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAPA 793 L++G+L ++ + +A +F G +VI +K + S G+GF+ + E Q FNG ++ P+ +N ++YG G +D F ++VG+L+ V D L+E F + +V AKVV DR +GRS+G+GFV + E ++ +NG+ R +R++ A Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGG---RDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
BLAST of FC878337 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 53/213 (24.88%), Postives = 95/213 (44.60%), Query Frame = 2 Query: 254 APDASSDG-----IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIAP--AATKKAATGQQYQKATYQNTQGSQGEN 871 A DASS G SL++GDL P + E + F S ++ ++ + S YG+ F+S A ++ N + + + R+ W+ RR G +FV +L VT+ VLQ+ F+ + ++ KV T G+S+GYGFV+F E ++ +N + + + + + T + ++Y +N E+ Sbjct: 10 AADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMFKK-FGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSED 215 The following BLAST results are available for this feature:
BLAST of FC878337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878337 ID=FC878337; Name=FC878337; organism=Citrus clementina; type=EST; length=937bpback to top |