CN182006

Overview
NameCN182006
Unique NameCN182006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2296 contig Csv1_Contig2296:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L A+  V+H SCF+CS+C   L L  Y+S+ G +YCKPHF QLFK  GN+++ F
Sbjct:  385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L A+  V+H SCF+CS+C   L L  Y+S+ G +YCKPHF QLFK  GN+++ F
Sbjct:  387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 456          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+KTVY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E      T +P+  AS F+   G  E+C  CS+ VY  EKV    +++HK+CF+C+  G  +  +  A  +G
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 47/156 (30.13%), Postives = 69/156 (44.23%), Query Frame = 2
Query:  290 CKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKES----GNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQE--------KCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGI 721
            C  C K VY  E + A    YHK C +C HC   L+L  YS  +G  YCK  +++LF+++    G    +   PA   E  TP     P+   +  + T+E         C  C K  Y  E     ++ +HKTCF C     ++    Y+  EG+
Sbjct:    5 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPV---EPTPPPTFLTPTEEVKVQLFPTNCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGL 157          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 47/161 (29.19%), Postives = 72/161 (44.72%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQ---SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +    P  S     P    + SK A  F G  EKC+ C  +VY  EKV    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 164          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_BOVIN (Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 49/167 (29.34%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSP---------------AKSAEKLTPELTRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            KC  C+KTVY  E++S+ G  +H+ C +C HC  TL    ++  +G  +C KP +  LF        G  +  ++ P               A++ E+      + PSKA+S+  F+G    C  C+K VY  EKV    + +H+ C +C   G +++P  +A  +G
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDG 170          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAK--SAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +   K  SA+   P    + SK A  + G  EKC+ C  +VY  EK+    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_PONAB (Cysteine and glycine-rich protein 1 OS=Pongo abelii GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+KTVY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E      T +P+  AS F+   G  E+C  CS+ VY  EKV    +++HK CF+C+  G  +  +  A  +G
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+KTVY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E      T +P+  AS F+   G  E+C  CS+ VY  EKV    +++HK+CF+C+  G  +  +  A  +G
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_HUMAN (Cysteine and glycine-rich protein 1 OS=Homo sapiens GN=CSRP1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+KTVY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E      T +P+  AS F+   G  E+C  CS+ VY  EKV    +++HK CF+C+  G  +  +  A  +G
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDG 163          
The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LIMA1_MOUSE5.711e-1851.43LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMA1_HUMAN7.459e-1851.43LIM domain and actin-binding protein 1 OS=Homo sap... [more]
CSRP1_RAT2.031e-1531.06Cysteine and glycine-rich protein 1 OS=Rattus norv... [more]
LIMC_DICDI2.653e-1530.13LIM domain-containing protein C OS=Dictyostelium d... [more]
CSRP2_COTJA2.653e-1529.19Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]
CRIP2_BOVIN2.653e-1529.34Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=... [more]
CSRP2_RAT3.465e-1528.75Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP1_PONAB3.465e-1531.06Cysteine and glycine-rich protein 1 OS=Pongo abeli... [more]
CSRP1_MOUSE3.465e-1531.06Cysteine and glycine-rich protein 1 OS=Mus musculu... [more]
CSRP1_HUMAN4.525e-1531.06Cysteine and glycine-rich protein 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACATTCTCTCTCTTCTTCATCATCACCATCCTCTCTCGCCCTGCT
TAGAAAAAGCTCCTCCAATCCCACGCGCCAATGTTCATTCCCCCAACCAT
CGCTTTCTCTTTCTCTTTCTCCTCTCCTTAAAACATCTCTCTAATATATA
ATATAGTCTCTCTAACTCAACTCCCCACTTGGGTTTTGTCCTTTTCCTTA
AAATCTCAGCTCAATCAACTTAAAGATCCATTTTTTTTTTCCTTTCCAAA
GATCTAAAAGCAATGTCTTTTATTGGTACCCAACAGAAATGCAAGGTCTG
TGAGAAGACAGTTTATCCAGTTGAGCAATTATCTGCTGATGGGGTTGTTT
ATCACAAGTCTTGCTTCAAGTGCTCTCACTGCAAAGGCACACTCAAGCTG
AGCAATTACTCATCCATGGAAGGTGTTCTTTACTGTAAGCCTCACTTTGA
GCAGCTTTTCAAGGAGTCGGGTAACTTCAACAAGAATTTCCAGTCACCTG
CAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGACAAGGTCGCCTAGCAAA
GCTGCCAGCATGTTCTCTGGGACCCAAGAAAAATGTGCTTCTTGCAGTAA
AACAGTGTATCCGTTGGAGAAGGTAGCAGTGGAAAACCAGGCCTATCACA
AGACATGTTTCAAGTGCTCGCATGGTGGTTGTTCCATTAGCCCATCAAAT
TATGCAGCCCTGGAAGGCATCTT
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