CN182006
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18 Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L A+ V+H SCF+CS+C L L Y+S+ G +YCKPHF QLFK GN+++ F Sbjct: 385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18 Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L A+ V+H SCF+CS+C L L Y+S+ G +YCKPHF QLFK GN+++ F Sbjct: 387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 456
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_RAT (Cysteine and glycine-rich protein 1 OS=Rattus norvegicus GN=Csrp1 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G +KC VC+KTVY E++ +G +HKSCF C CK L + + +YCK + + + G + +K K E T +P+ AS F+ G E+C CS+ VY EKV +++HK+CF+C+ G + + A +G Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDG 163
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15 Identity = 47/156 (30.13%), Postives = 69/156 (44.23%), Query Frame = 2 Query: 290 CKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKES----GNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQE--------KCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEGI 721 C C K VY E + A YHK C +C HC L+L YS +G YCK +++LF+++ G + PA E TP P+ + + T+E C C K Y E ++ +HKTCF C ++ Y+ EG+ Sbjct: 5 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPV---EPTPPPTFLTPTEEVKVQLFPTNCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGL 157
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15 Identity = 47/161 (29.19%), Postives = 72/161 (44.72%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQ---SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC C +TVY E++ DG +H+ CF C C+ L + + + +YCK + + + G N ++ + P S P + SK A F G EKC+ C +VY EKV + +HK CF+C+ G S+ + EG Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 164
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_BOVIN (Cysteine-rich protein 2 OS=Bos taurus GN=CRIP2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15 Identity = 49/167 (29.34%), Postives = 81/167 (48.50%), Query Frame = 2 Query: 287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSP---------------AKSAEKLTPELTRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 KC C+KTVY E++S+ G +H+ C +C HC TL ++ +G +C KP + LF G + ++ P A++ E+ + PSKA+S+ F+G C C+K VY EKV + +H+ C +C G +++P +A +G Sbjct: 4 KCPKCDKTVYFAEKVSSLGKDWHRFCLRCEHCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPSAEKPQVTGPIEVPVARTEERKASGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDG 170
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAK--SAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC C +TVY E++ DG +H+ CF C C+ L + + + +YCK + + + G N ++ + K SA+ P + SK A + G EKC+ C +VY EK+ + +HK CF+C+ G S+ + EG Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 163
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_PONAB (Cysteine and glycine-rich protein 1 OS=Pongo abelii GN=CSRP1 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G +KC VC+KTVY E++ +G +HKSCF C CK L + + +YCK + + + G + +K K E T +P+ AS F+ G E+C CS+ VY EKV +++HK CF+C+ G + + A +G Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEESPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDG 163
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_MOUSE (Cysteine and glycine-rich protein 1 OS=Mus musculus GN=Csrp1 PE=1 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15 Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G +KC VC+KTVY E++ +G +HKSCF C CK L + + +YCK + + + G + +K K E T +P+ AS F+ G E+C CS+ VY EKV +++HK+CF+C+ G + + A +G Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDG 163
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_HUMAN (Cysteine and glycine-rich protein 1 OS=Homo sapiens GN=CSRP1 PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFS---GTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G +KC VC+KTVY E++ +G +HKSCF C CK L + + +YCK + + + G + +K K E T +P+ AS F+ G E+C CS+ VY EKV +++HK CF+C+ G + + A +G Sbjct: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPN--ASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDG 163 The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bpback to top |