CN182006
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.917e-48 Identity = 84/152 (55.26%), Postives = 114/152 (75.00%), Query Frame = 2 Query: 266 SFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQ-SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 SF GT QKC VCEKTVY V++L A+ VYHK+CF+C HC TLKLSN++S +GV+YC+ HF+QLFK +G+ K+F +P E+ + T+S ++ +S F GT++KC +C+K VYP+E+V V+ AYH+ CFKC HGGC+ISPSNY A EG Sbjct: 3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEG 154 HSP 2 Score: 90.1225 bits (222), Expect = 1.272e-17 Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 269 FIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFN-----KNFQSPAKSAEKLTPELTRSPSKAASMFSGTQ 577 F GT+ KC C K VYP+E++ DG YH++CFKC H T+ SNY + EG LYCK H QLFK+ GN++ + +PA+S + T A + + TQ Sbjct: 103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQNADTQ 210
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20 Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 2 Query: 266 SFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 +F+ ++ C +C+KTVYP+E L AD +HKSCF+C HC L L NY+S+ G +YCKPHF+QLFK GN+++ F Sbjct: 3249 AFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19 Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC CEKTVY E++ +G +HK+CF C C+ L + ++ E +YCK + + + G + FQ K A +T T +PSK + F G EKC C K+VY EKV + +HKTCF+C+ G S+ +N +G Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVT---TSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19 Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC CEKTVY E++ +G +HK+CF C C+ L + ++ E +YCK + + + G + FQ K A T T +PSK ++ F G EKC C K+VY EKV + +HKTCF+C+ G S+ +N +G Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAAT---TSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19 Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L AD +++H SCF C HC L L +Y++M G YCKPHF+QLFK GN+++ F Sbjct: 38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18 Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L AD +++H SCF C HC L L +Y++M G YC+PHF+QLFK GN+++ F Sbjct: 38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18 Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L AD +++H SCF C HC L L +Y+++ G YCKPHF+QLFK GN+++ F Sbjct: 37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18 Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490 ++ C C+KTVYP+E+L AD +++H SCF C HC L L +Y+++ G YCKPHF+QLFK GN+++ F Sbjct: 38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18 Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC C+KTVY E++ +G +HK+CF C C+ L + ++ E +YCK + + + G + FQ K A T T +PSK ++ F G EKC C K+VY EKV + +HKTCF C+ G S+ +N +G Sbjct: 5 GGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAAT---TSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDG 164
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18 Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 2 Query: 275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718 G KC CEKTVY E++ +G +HK+CF C C+ L + ++ E +YCK + + + G + FQ K A T + +PSK A G EKC C K+VY EKV + +HKTCF+C+ G S+ +N +G Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKQARSAT--TSSNPSKFAKF--GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164 The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bpback to top |