CN182006

Overview
NameCN182006
Unique NameCN182006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.917e-48
Identity = 84/152 (55.26%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  266 SFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQ-SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            SF GT QKC VCEKTVY V++L A+  VYHK+CF+C HC  TLKLSN++S +GV+YC+ HF+QLFK +G+  K+F  +P    E+   + T+S ++ +S F GT++KC +C+K VYP+E+V V+  AYH+ CFKC HGGC+ISPSNY A EG
Sbjct:    3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEG 154          

HSP 2 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  269 FIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFN-----KNFQSPAKSAEKLTPELTRSPSKAASMFSGTQ 577
            F GT+ KC  C K VYP+E++  DG  YH++CFKC H   T+  SNY + EG LYCK H  QLFK+ GN++     +   +PA+S  + T         A +  + TQ
Sbjct:  103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQNADTQ 210          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  266 SFIGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            +F+  ++ C +C+KTVYP+E L AD   +HKSCF+C HC   L L NY+S+ G +YCKPHF+QLFK  GN+++ F
Sbjct: 3249 AFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  CEKTVY  E++  +G  +HK+CF C  C+  L  +  ++ E  +YCK  + + +   G                +    FQ   K A  +T   T +PSK  + F G  EKC  C K+VY  EKV    + +HKTCF+C+  G S+  +N    +G
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVT---TSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  CEKTVY  E++  +G  +HK+CF C  C+  L  +  ++ E  +YCK  + + +   G                +    FQ   K A   T   T +PSK ++ F G  EKC  C K+VY  EKV    + +HKTCF+C+  G S+  +N    +G
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAAT---TSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y++M G  YCKPHF+QLFK  GN+++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y++M G  YC+PHF+QLFK  GN+++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y+++ G  YCKPHF+QLFK  GN+++ F
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  281 QQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNF 490
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y+++ G  YCKPHF+QLFK  GN+++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C+KTVY  E++  +G  +HK+CF C  C+  L  +  ++ E  +YCK  + + +   G                +    FQ   K A   T   T +PSK ++ F G  EKC  C K+VY  EKV    + +HKTCF C+  G S+  +N    +G
Sbjct:    5 GGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARAAT---TSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDG 164          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  CEKTVY  E++  +G  +HK+CF C  C+  L  +  ++ E  +YCK  + + +   G                +    FQ   K A   T   + +PSK A    G  EKC  C K+VY  EKV    + +HKTCF+C+  G S+  +N    +G
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKQARSAT--TSSNPSKFAKF--GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDG 164          
The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
SF3_HELAN6.917e-4855.26Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE3.577e-2052.00Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP3_HUMAN1.775e-1932.93Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP3_MOUSE3.028e-1932.93Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
LIMD2_RAT6.746e-1951.43LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_MOUSE1.503e-1850.00LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMD2_HUMAN1.503e-1850.00LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN1.503e-1850.00LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
CSRP3_RAT1.503e-1832.32Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP3_BOVIN1.503e-1832.32Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACATTCTCTCTCTTCTTCATCATCACCATCCTCTCTCGCCCTGCT
TAGAAAAAGCTCCTCCAATCCCACGCGCCAATGTTCATTCCCCCAACCAT
CGCTTTCTCTTTCTCTTTCTCCTCTCCTTAAAACATCTCTCTAATATATA
ATATAGTCTCTCTAACTCAACTCCCCACTTGGGTTTTGTCCTTTTCCTTA
AAATCTCAGCTCAATCAACTTAAAGATCCATTTTTTTTTTCCTTTCCAAA
GATCTAAAAGCAATGTCTTTTATTGGTACCCAACAGAAATGCAAGGTCTG
TGAGAAGACAGTTTATCCAGTTGAGCAATTATCTGCTGATGGGGTTGTTT
ATCACAAGTCTTGCTTCAAGTGCTCTCACTGCAAAGGCACACTCAAGCTG
AGCAATTACTCATCCATGGAAGGTGTTCTTTACTGTAAGCCTCACTTTGA
GCAGCTTTTCAAGGAGTCGGGTAACTTCAACAAGAATTTCCAGTCACCTG
CAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGACAAGGTCGCCTAGCAAA
GCTGCCAGCATGTTCTCTGGGACCCAAGAAAAATGTGCTTCTTGCAGTAA
AACAGTGTATCCGTTGGAGAAGGTAGCAGTGGAAAACCAGGCCTATCACA
AGACATGTTTCAAGTGCTCGCATGGTGGTTGTTCCATTAGCCCATCAAAT
TATGCAGCCCTGGAAGGCATCTT
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