CN182006

Overview
NameCN182006
Unique NameCN182006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2296 contig Csv1_Contig2296:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_HUMAN (Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSP---------------AKSAEKLTPELTRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            KC  C+KTVY  E++S+ G  +HK C KC  C  TL    ++  +G  +C KP +  LF        G  +  ++ P               A++ E+      + PS+A+S+  F+G    C  CSK VY  EKV    + +H+ C +C   G +++P  +A  +G
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDG 170          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAK--SAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +   K  SA+   P    + SK A  + G  EKC+ C  +VY  EK+    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_CHICK (Cysteine and glycine-rich protein 2 OS=Gallus gallus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 46/161 (28.57%), Postives = 72/161 (44.72%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQ---SPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +    P  +     P    + SK A  F G  EKC+ C  +VY  EKV    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 164          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_BOVIN (Cysteine and glycine-rich protein 1 OS=Bos taurus GN=CSRP1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSP--SKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+KTVY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      +  E      T +P  SK A    G+ E+C  CS+ VY  EKV    +++HK+CF+C+  G  +  +  A  +G
Sbjct:    5 GGGKKCGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYGYGQGAGTLSMDKGESLGIRHEEAPGHRPTTNPNTSKFAQKVGGS-ERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGKGLESTTLADKDG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_RAT (Cysteine-rich protein 2 OS=Rattus norvegicus GN=Crip2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSPAKSAEKLTPEL---------------TRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            KC  C+KTVY  E++S+ G  +HK C KC  C  TL    ++  +G  +C KP +  LF        G  +  ++ P   A ++T  +                + PSKA+S+  F+G    C  C+K VY  EKV    + +H+ C +C     +++P  +A  +G
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPPTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDG 170          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_MOUSE (Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSPAKSAEKLTPEL---------------TRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            KC  C+KTVY  E++S+ G  +HK C KC  C  TL    ++  +G  +C KP +  LF        G  +  ++ P   A ++T  +                + PSKA+S+  F+G    C  C+K VY  EKV    + +H+ C +C     +++P  +A  +G
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDG 170          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAK--SAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +   K  S +   P    + SK A  + G  EKC+ C  +VY  EK+    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAK--SAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G   KC  C +TVY  E++  DG  +H+ CF C  C+  L  +  +  +  +YCK  + + +   G          N ++  +   K  S +   P    + SK A  + G  EKC+ C  +VY  EK+    + +HK CF+C+  G S+  +     EG
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEG 163          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_COTJA (Cysteine and glycine-rich protein 1 OS=Coturnix coturnix japonica GN=CSRP1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 44/158 (27.85%), Postives = 72/158 (45.57%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+K VY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E  +   T   +   +   G  + C  C + VY  EKV    +++HK+CF+C+  G S+  +  A  +G
Sbjct:    5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDG 162          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CSRP1_CHICK (Cysteine and glycine-rich protein 1 OS=Gallus gallus GN=CSRP1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 44/158 (27.85%), Postives = 72/158 (45.57%), Query Frame = 2
Query:  275 GTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESG----------NFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            G  +KC VC+K VY  E++  +G  +HKSCF C  CK  L  +  +     +YCK  + + +   G          + +K      K  E  +   T   +   +   G  + C  C + VY  EKV    +++HK+CF+C+  G S+  +  A  +G
Sbjct:    5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYGYGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDG 162          
The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CRIP2_HUMAN4.525e-1529.94Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 P... [more]
CSRP2_MOUSE5.910e-1528.75Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP2_CHICK5.910e-1528.57Cysteine and glycine-rich protein 2 OS=Gallus gall... [more]
CSRP1_BOVIN5.910e-1530.63Cysteine and glycine-rich protein 1 OS=Bos taurus ... [more]
CRIP2_RAT1.317e-1429.34Cysteine-rich protein 2 OS=Rattus norvegicus GN=Cr... [more]
CRIP2_MOUSE1.317e-1429.34Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 P... [more]
CSRP2_HUMAN1.720e-1428.13Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN1.720e-1428.13Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP1_COTJA6.534e-1427.85Cysteine and glycine-rich protein 1 OS=Coturnix co... [more]
CSRP1_CHICK6.534e-1427.85Cysteine and glycine-rich protein 1 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACATTCTCTCTCTTCTTCATCATCACCATCCTCTCTCGCCCTGCT
TAGAAAAAGCTCCTCCAATCCCACGCGCCAATGTTCATTCCCCCAACCAT
CGCTTTCTCTTTCTCTTTCTCCTCTCCTTAAAACATCTCTCTAATATATA
ATATAGTCTCTCTAACTCAACTCCCCACTTGGGTTTTGTCCTTTTCCTTA
AAATCTCAGCTCAATCAACTTAAAGATCCATTTTTTTTTTCCTTTCCAAA
GATCTAAAAGCAATGTCTTTTATTGGTACCCAACAGAAATGCAAGGTCTG
TGAGAAGACAGTTTATCCAGTTGAGCAATTATCTGCTGATGGGGTTGTTT
ATCACAAGTCTTGCTTCAAGTGCTCTCACTGCAAAGGCACACTCAAGCTG
AGCAATTACTCATCCATGGAAGGTGTTCTTTACTGTAAGCCTCACTTTGA
GCAGCTTTTCAAGGAGTCGGGTAACTTCAACAAGAATTTCCAGTCACCTG
CAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGACAAGGTCGCCTAGCAAA
GCTGCCAGCATGTTCTCTGGGACCCAAGAAAAATGTGCTTCTTGCAGTAA
AACAGTGTATCCGTTGGAGAAGGTAGCAGTGGAAAACCAGGCCTATCACA
AGACATGTTTCAAGTGCTCGCATGGTGGTTGTTCCATTAGCCCATCAAAT
TATGCAGCCCTGGAAGGCATCTT
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