CN182006

Overview
NameCN182006
Unique NameCN182006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2296 contig Csv1_Contig2296:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: CRIP2_PONAB (Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYC-KPHFEQLF-----KESGNFNKNFQSP---------------AKSAEKLTPELTRSPSKAASM--FSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKCSHGGCSISPSNYAALEG 718
            KC  C+KTV   E++S+ G  +HK C KC  C  TL    ++  +G  +C KP +  LF        G  +  ++ P               A++ E+      + PS+A+S+  F+G    C  CSK VY  EKV    + +H+ C  C   G +++P  +A  +G
Sbjct:    4 KCPKCDKTVCFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLHCERCGKTLTPGGHAEHDG 170          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: MLP2_DROME (Muscle LIM protein Mlp84B OS=Drosophila melanogaster GN=Mlp84B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 44/146 (30.14%), Postives = 64/146 (43.84%), Query Frame = 2
Query:  287 KCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGN-----------------FNKNFQSPA-KSAEKLTPE-LTRSPSKAASMFSGTQEKCASCSKTVYPLEKVAVENQAYHKTCFKC 667
            KC  C K+VY  E+  A G V+HK+CFKC  C  +L  +N +  E  LYCK    + F   G                    +N   P+ ++  +L P  + R+P           E C  C   VY  E++    +++HK CFKC
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQFLRENGDVPSVRNGARLEPRAIARAPE---------GEGCPRCGGYVYAAEQMLARGRSWHKECFKC 147          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: MICA2_HUMAN (Protein MICAL-2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  245 SKDLKAM--SF---IGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCA 589
            S DL++M  SF   +G    C  C+K VY +E+LSA+G  +H+ CF+CS C  TL+L+ Y+    EG  YCKPHF      S    K  +  A+  ++   E T    +A    + T+  CA
Sbjct:  982 SPDLESMRKSFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNS----KQRKRRAELKQQREEEATWQEQEAPRRDTPTESSCA 1099          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: MICA3_HUMAN (Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  272 IGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHF 448
            +G    C  C+K VY +E+LSA+G  +H+SCFKC +C  TL+LS Y+    +G  YCKPH+
Sbjct:  786 LGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKPHY 846          
BLAST of CN182006 vs. ExPASy Swiss-Prot
Match: MICA2_MOUSE (Protein MICAL-2 OS=Mus musculus GN=Mical2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  272 IGTQQKCKVCEKTVYPVEQLSADGVVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHF 448
            +G +  C  C+K VY +E+LSA+G  +H+ CF+CS C  TL+L+ Y+    EG  YCKPHF
Sbjct:  747 LGGRDTCYFCKKRVYMIERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGKFYCKPHF 807          
The following BLAST results are available for this feature:
BLAST of CN182006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CRIP2_PONAB1.115e-1329.34Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 P... [more]
MLP2_DROME1.363e-1130.14Muscle LIM protein Mlp84B OS=Drosophila melanogast... [more]
MICA2_HUMAN3.035e-1136.07Protein MICAL-2 OS=Homo sapiens GN=MICAL2 PE=1 SV=... [more]
MICA3_HUMAN3.964e-1147.54Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=... [more]
MICA2_MOUSE6.762e-1147.54Protein MICAL-2 OS=Mus musculus GN=Mical2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182006 ID=CN182006; Name=CN182006; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACATTCTCTCTCTTCTTCATCATCACCATCCTCTCTCGCCCTGCT
TAGAAAAAGCTCCTCCAATCCCACGCGCCAATGTTCATTCCCCCAACCAT
CGCTTTCTCTTTCTCTTTCTCCTCTCCTTAAAACATCTCTCTAATATATA
ATATAGTCTCTCTAACTCAACTCCCCACTTGGGTTTTGTCCTTTTCCTTA
AAATCTCAGCTCAATCAACTTAAAGATCCATTTTTTTTTTCCTTTCCAAA
GATCTAAAAGCAATGTCTTTTATTGGTACCCAACAGAAATGCAAGGTCTG
TGAGAAGACAGTTTATCCAGTTGAGCAATTATCTGCTGATGGGGTTGTTT
ATCACAAGTCTTGCTTCAAGTGCTCTCACTGCAAAGGCACACTCAAGCTG
AGCAATTACTCATCCATGGAAGGTGTTCTTTACTGTAAGCCTCACTTTGA
GCAGCTTTTCAAGGAGTCGGGTAACTTCAACAAGAATTTCCAGTCACCTG
CAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGACAAGGTCGCCTAGCAAA
GCTGCCAGCATGTTCTCTGGGACCCAAGAAAAATGTGCTTCTTGCAGTAA
AACAGTGTATCCGTTGGAGAAGGTAGCAGTGGAAAACCAGGCCTATCACA
AGACATGTTTCAAGTGCTCGCATGGTGGTTGTTCCATTAGCCCATCAAAT
TATGCAGCCCTGGAAGGCATCTT
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