FC873020

Overview
NameFC873020
Unique NameFC873020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7452 contig Ccv1_Contig7452:1128..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873020 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 41/145 (28.28%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 415
            +V E    R R++++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +  L+    +K V+    KLFS+   +      + ++ +++ GT +R+L DP GQ++++V+   +   HLY+ S  + ++ +++L
Sbjct:  271 LVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412          
BLAST of FC873020 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.508e-12
Identity = 44/146 (30.14%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQLS 418
            +V E+   R R+  + G  KG ++TF +NLPG PDNI  +  G +W+A+  +        +  L+    IK ++    KLFS+ + +      + +I + E G  +R+  DP G + ++V+   + D HLY+ S  S ++ K+ LS
Sbjct:  272 LVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414          
BLAST of FC873020 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.806e-12
Identity = 44/145 (30.34%), Postives = 77/145 (53.10%), Query Frame = 2
Query:    2 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 415
            +V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    KLFS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  232 LVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373          
BLAST of FC873020 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 43/145 (29.66%), Postives = 77/145 (53.10%), Query Frame = 2
Query:    2 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKVLNSSKLIKHVLAAYPKLFSRFITL---GGGAHLINVAEDGTIIRNLVDPTGQLMSFVTSGLQVDDHLYMISLTSNFIGKVQL 415
            +V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    IK ++    K+FS+   +      + ++ V++ G   R+L DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct:  271 LVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412          
The following BLAST results are available for this feature:
BLAST of FC873020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APMAP_BOVIN3.370e-1228.28Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_SALSA7.508e-1230.14Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_RAT9.806e-1230.34Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_MOUSE1.281e-1129.66Adipocyte plasma membrane-associated protein OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BF05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873020 ID=FC873020; Name=FC873020; organism=Citrus clementina; type=EST; length=534bp
TGTTGTTTGTGAATCATGGAAATTCAGGTGCCGTAAGTATTGGCTGAAGG
GCGAGCGTAAAGGGAAATTAGAAACTTTCGCTGAAAACCTACCAGGTGCA
CCTGATAACATCAACCTTGCCCCAGATGGCACATTTTGGATTGCAATAAT
AAAGTTGGATGCTAGGAGGATGAAGGTTTTAAACAGTTCCAAGCTAATCA
AACATGTTCTAGCAGCATATCCGAAACTGTTCTCTCGATTCATCACCTTA
GGCGGCGGAGCACACTTAATAAATGTTGCAGAAGATGGCACTATAATCAG
AAATCTTGTTGATCCTACCGGACAGTTGATGTCGTTTGTGACCTCAGGCT
TGCAGGTTGATGATCATCTCTACATGATTAGCCTCACCTCTAACTTCATA
GGGAAAGTGCAACTGAGTTAAGCTGCATAACTTGTGTCGAGAGAAAATGG
TTTCCTCAGGGAAAACTCTGTTCCCGAATTGATTAAATCAGTATTAAGGT
GTGTTTATGTTCTTATAAAAAAAAAAAAAAAAAA
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