FC873116

Overview
NameFC873116
Unique NameFC873116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873116 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.889e-38
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 2 
Query:    2 KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 232
            KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  237 KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
[Close]
BLAST of FC873116 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.066e-34
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 2 
Query:    2 KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 232
            KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  236 KSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
[Close]
BLAST of FC873116 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.626e-33
Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 2 
Query:    2 KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 232
            KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  236 KSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
[Close]
BLAST of FC873116 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.641e-33
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 2 
Query:    2 KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 232
            +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  236 RSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
The following BLAST results are available for this feature:
BLAST of FC873116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TF2B_SOYBN7.889e-3898.70Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH1.066e-3493.51Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B1_ARATH2.626e-3390.91Transcription initiation factor IIB-1 OS=Arabidops... [more]
TF2B_ORYSJ7.641e-3387.01Transcription initiation factor IIB OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873116 ID=FC873116; Name=FC873116; organism=Citrus clementina; type=EST; length=438bp
GAAGTCCGAGGAGTTTGATATAAGGAGGAGCCCAATATCAATTGCAGCTG
CAGTTATTTATATTATAACTCAGCTTTCAGATGACAAGAAGCCGCTCAAA
GATATTTCTGTTGCAACTGGAGTTGCCGAAGGGACAATCAGAAATTCGTA
CAAGGATCTTTATCCTCATGTCTCAAAGATAATACCAAACTGGTATGCCA
AGGAGGAGGATCTTAAAAACCTTTGCAGCCCGTAAAATGTAGAGCACATG
AATAACAACACCGTGAAACAAGCATCTTGAATGGTTTGAACTGCCCTCAC
GTTGATGTATTCAGAACCTGTAAGCATCCTATTTACAAGGATTTTCGTAC
TTATTTTCTTAACTGTTTTGTCTTTGTGCAGTTGACTGCATTGCAACCTT
TAATTTATAAATATTGACAAAAAAAAAAAAAAAAAAAA
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