FC930008

Overview
NameFC930008
Unique NameFC930008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9416 contig Ccv1_Contig9416:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 39/88 (44.32%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPS-EKIP 672
            +P +GES+T+GT+ ++LK  GD VELDEP+ ++ TDKV  ++ SP AGV+ +++ +E +TVE G ++AVI  + +     AP+ EK+P
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVIGDAKDAGEAAAPAPEKVP 94          

HSP 2 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  388 GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPS---EKIPEKA 681
            GGD    ++P +GES+T+GT+ ++LK  GD V++DEP+ ++ TDKV  ++ SP AGV+  +   E  TV  G ++A I  + +  A  AP    + +PE A
Sbjct:  118 GGDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAADIGAAPAPKPAPKPVPEPA 218          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 39/88 (44.32%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPS-EKIP 672
            +P +GES+T+GT+ ++LK  GD VELDEP+ ++ TDKV  ++ SP AGV+ +++ +E +TVE G ++AVI  + +     AP+ EK+P
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVIGDAKDAGEAAAPAPEKVP 94          

HSP 2 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  388 GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPS---EKIPEKA 681
            GGD    ++P +GES+T+GT+ ++LK  GD V++DEP+ ++ TDKV  ++ SP AGV+  +   E  TV  G ++A I  + +  A  AP    + +PE A
Sbjct:  118 GGDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAADIGAAPAPKPAPKPVPEPA 218          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISK-SGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S EAGV++EL+  EG+TVE G  IAV+ + SG   +     ++ P++
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELLANEGDTVEVGQAIAVVGEGSGNNTSEAPAKQEAPKQ 95          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IAVI +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IAVI +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNLGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=odhB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
BLAST of FC930008 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVVKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK 678
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +  EG+TVE G  IA+I +     +    ++  P++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAIIGEGSGNASKENSNDNTPQQ 94          
The following BLAST results are available for this feature:
BLAST of FC930008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ODO2_MYCTU4.857e-1644.32Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO4.857e-1644.32Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS12.410e-1545.56Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAB9.159e-1544.94Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW1.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS1.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAR1.196e-1444.94Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAN1.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAM1.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC1.196e-1443.82Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC34002G08EF PostHarvC1 Citrus clementina cDNA clone C34002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930008 ID=FC930008; Name=FC930008; organism=Citrus clementina; type=EST; length=681bp
GGACGAAACAATCATTCATTCAACGTTGTTGTGTTCGTCTGAAGACTCTC
TCAAAGAAAACGCAACTTGTTCTGTTCGATCAAGCAGGTACATACCTGAA
CAACGATGCTGGGTGTTATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCT
GCTTCGATTTTAGGGCATTCACTGCAGACAATGAGGCCTGCAATGTCTGT
ATCTAGAGTCTCATCTATTGCAGGAAAAGAGACGTTACTGCATTCAAGAG
GATTAGGGCATATCCGGAATTTCAGTCATTTAATTTTTCCAGGTTGCTCT
AAGGGTTGTCAACCATTAAGGGATGTAATTTCTAGCACCCAGAAAGCAAC
TAACATGTATCTGTGGAGCCATCCATTTTCTTCTGAAGGAGGGGATTTGG
TTGATGCTGTTGTCCCTTTTATGGGTGAATCCATAACCGATGGTACTTTG
GCAAAATTCTTGAAGGGTCCTGGTGATAGGGTGGAACTTGATGAACCAAT
TGCTCAAATTGAAACCGATAAGGTAACGATTGATGTTGCAAGTCCAGAAG
CAGGTGTTATCAAAGAGCTTGTAGTCAAAGAAGGGGAGACTGTGGAACCA
GGTACCAAGATTGCTGTGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGT
AGCTCCCTCAGAAAAAATACCAGAGAAAGCT
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