CB250289
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17 Identity = 70/236 (29.66%), Postives = 113/236 (47.88%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ R + + +V +D P K V L LP+FH + G+ A G T V +RKFD + ++R+H +T P ++ I+ PR +E L + + ++ +GA P L F + ++ GYG+TE ++ C A E ++KS V E+ ++D ++G S+ + + GEI RG +M GYL DP T+ + +DGW Sbjct: 191 TTGLPKGVMLTHRSL-ITSVAQQVDGENPNLYFSKDDVILCLLPLFHIYSLNSVLLAGLRA-GSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLAS-IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCL-------AFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQS--GEICIRGEQIMKGYLNDPEATKNTIDEDGW 414
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15 Identity = 71/238 (29.83%), Postives = 111/238 (46.64%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWS--YPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ RG+ V +V L+D P + V L LPMFH GM A G V +++FD + ++ +HGVT AP+V ++ + +S+ L + + ++ +GA P L + ++ GYG+TE ++ C A E +KS V E+ ++D ++GLS+ + GEI RG +M GYL +P T K + DGW Sbjct: 188 TTGLPKGVMLSHRGL-VTSVAQLVDGENPNLHLREDDVVLCVLPMFHVYSLHSILLCGMRA-GAAIVVMKRFDTVKMLQLVERHGVTI---APLVPPIVVEMAKSDALDRHDLSSIRMVISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCM-------AFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQP--GEICIRGKQIMKGYLNNPEATEKTIDKDGW 411
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 65/232 (28.02%), Postives = 104/232 (44.83%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP---KQPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVL--FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCF--TEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT KGVV R + M + + + K +L T+PMFH G ++ G+ G T V L K++ + I +GVT++ P +L + P+ PL +L+ GAP ++ FR + + GYGLTE+ + S T+ A R G + TE ++D +SG ++ + GE+ RG +M GY K+ T+ + DGW Sbjct: 210 TTGPSKGVVATHRSLISMVQIIMTRFRLEGSDKTETFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVAMVAHPKPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGAS------------TDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVN--RTGELWIRGPYVMKGYFKNAEATQSTLTPDGW 427
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ R + V +V +D P ++ V L LP+FH + G+ A G V +RKFD + + R+HGVT P ++ I+ PR ++ L + + ++ +GA P L F + ++ GYG+TE ++ C A E +KS V E+ ++D ++G ++ + + GEI RG +M GYL DP T+ + GW Sbjct: 201 TTGLPKGVMLTHRSL-VTSVAQQVDGENPNLYFRREDVVLCLLPLFHIYSLNSVLLAGLRA-GSAIVIMRKFDLGALVDLTRRHGVTVAPFVPPIVVEIAKSPRVTADDLAS-IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCL-------AFAKEPFEVKSGSCGTVVRNAELKIVDPDTGATLGRNQS--GEICIRGEQIMKGYLNDPESTKNTIDKGGW 424
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: MENE_BACP2 (2-succinylbenzoate--CoA ligase OS=Bacillus pumilus (strain SAFR-032) GN=menE PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12 Identity = 68/230 (29.57%), Postives = 100/230 (43.48%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISN-LPRSEPLRNPVH-ILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATER----ARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV F V S ++ + + +L LP+FH +G S + G T V +KFD + I QH VT + VV M+S L R E + + +L G P P A+L ++ GF V YG+TET +V+ A + +L + + +K + G R +C H GEI+ +G ++M GYL T D GW Sbjct: 154 TTGRPKGVEQTFGNHFHSAVSSALNMGLREDDRWLIALPLFHISGLSALFKSVIYGMTVVLHQKFDVDEVIGSIEQHRVTMI---SVVQTMLSRLLSRLEECPSSLRCLLLGGGPAPLAMLQESKEKGFPVFQSYGMTETCSQIVTLAPEFSVEKLGSAGKPLFGCELKIQDGTR-IC------------RPFEH-----GEIMVKGANVMKGYLYREESTAAAF-DQGW 361
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12 Identity = 69/238 (28.99%), Postives = 109/238 (45.80%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASL-GEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ R + +V +D P V L LPMFH + VG V +R+FD A + ++ +H VT AP+V ++ + +SE + V ++ +GA P + F + G ++ GYG+TE ++ C A E ++KS V E+ +ID ++G S+ G +L GEI RG +M GYL +P T+ + +GW Sbjct: 212 TTGLPKGVMLTHRSLST-SVAQQVDGENPNIGLHAGDVILCALPMFHIYSLNTIMMCGLRVGAAIVVMRRFDLAAMMDLVERHRVTI---APLVPPIVVAVAKSEAAAARDLSSVRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGPVLSMCL-------AFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSL---GRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGW 435
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12 Identity = 65/234 (27.78%), Postives = 106/234 (45.30%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V ++ +D P V L LPMFH + G + + +F+ ++ +I+++ VT + AP V+ P +E + V I+ +GA L L F + GYG+TE+ + S A+ A + KS + E+ V+D+E+G+S+ + + GEI RG +M GYL DP T + + DGW Sbjct: 221 TTGLPKGVMITHKGL-VTSIAQKVDGENPNLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVPVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTESGTVAKSLAF--------AKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKS--GEICVRGHQLMKGYLNDPEATARTIDKDGW 443
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12 Identity = 68/237 (28.69%), Postives = 110/237 (46.41%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D P V L LP+FH + A G + ++KF+ +I+++ VT AP+V ++ ++ +S + + V I+ +GA P L R + GYG+TE AG V++ N P +KS V +I ++D+E+G S+ H+ A GEI RG +M GY+ DP T + ++GW Sbjct: 192 TTGLPKGVMLTHKGL-VSSVAQQVDGENPNLYFHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTV---APIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTE-AGPVLAMNLAFAKNPFP------VKSGSCGTVVRNAQIKILDTETGESLPHNQA--GEICIRGPEIMKGYINDPESTAATIDEEGW 415
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11 Identity = 61/232 (26.29%), Postives = 101/232 (43.53%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFV--MTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCL-RKFDAAVIYIMIRQHGVTHMCGAPVVLN--MISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESL-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL-KDPNGTRKCMKDDGWF 675 TT +PKGV++ R + MT ++ + L +PMFH N W P+ A VG V D A + +I GV+ G PVV + + ++ ++ G+ PA+++ + G V H +G+TE + + L E+ ++ QG R E+ +++ E G+ + DG S G ++ RG ++ Y DP T DGWF Sbjct: 188 TTGNPKGVLYSHRSTVLHSMTTAMPDTLNLSARDTILPVVPMFHVNAWGTPYSAAMVGAKLVLPGPALDGASLSKLIASEGVSIALGVPVVWQGLLAAQAGNGSKSQSLTRVVVGGSACPASMIREFNDIYGVEVIHAWGMTELSPFGTANTPLAHHVDLSPDEKLSLRKSQG-RPPYGVELKIVNDE-GIRLPEDGRSKGNLMARGHWVIKDYFHSDPGST----LSDGWF 413
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11 Identity = 70/234 (29.91%), Postives = 106/234 (45.30%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D P + V L LPMFH S VG T + + KF+ ++ I++ VT P ++ I+ P +E + V ++ +GA P L S F + GYG+TE AG V++ + A E +KS V E+ ++D ++G S+ + GEI RG +M GYL DP T + DGW Sbjct: 206 TTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFNRDDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTE-AGPVLAMSLGF------AKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKP--GEICIRGNQIMKGYLNDPLATASTIDKDGW 429 The following BLAST results are available for this feature:
BLAST of CB250289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250289 ID=CB250289; Name=CB250289; organism=Citrus sinensis; type=EST; length=675bpback to top |