CB250289

Overview
NameCB250289
Unique NameCB250289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 70/236 (29.66%), Postives = 113/236 (47.88%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   R + + +V   +D   P     K  V L  LP+FH    +     G+ A G T V +RKFD   +  ++R+H +T     P ++  I+  PR  +E L + + ++ +GA P    L   F  +    ++  GYG+TE   ++  C          A E  ++KS      V   E+ ++D ++G S+  + +  GEI  RG  +M GYL DP  T+  + +DGW
Sbjct:  191 TTGLPKGVMLTHRSL-ITSVAQQVDGENPNLYFSKDDVILCLLPLFHIYSLNSVLLAGLRA-GSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLAS-IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCL-------AFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQS--GEICIRGEQIMKGYLNDPEATKNTIDEDGW 414          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 71/238 (29.83%), Postives = 111/238 (46.64%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWS--YPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   RG+ V +V  L+D   P     +  V L  LPMFH          GM A G   V +++FD   +  ++ +HGVT    AP+V  ++  + +S+ L     + + ++ +GA P    L      +    ++  GYG+TE   ++  C          A E   +KS      V   E+ ++D ++GLS+  +    GEI  RG  +M GYL +P  T K +  DGW
Sbjct:  188 TTGLPKGVMLSHRGL-VTSVAQLVDGENPNLHLREDDVVLCVLPMFHVYSLHSILLCGMRA-GAAIVVMKRFDTVKMLQLVERHGVTI---APLVPPIVVEMAKSDALDRHDLSSIRMVISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCM-------AFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQP--GEICIRGKQIMKGYLNNPEATEKTIDKDGW 411          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 65/232 (28.02%), Postives = 104/232 (44.83%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP---KQPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVL--FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCF--TEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT   KGVV   R +  M    +  + +    K   +L T+PMFH  G  ++  G+   G T V L K++   +   I  +GVT++   P +L  +   P+  PL     +L+ GAP    ++  FR +     +  GYGLTE+  +  S            T+ A    R G   +    TE  ++D +SG ++  +    GE+  RG  +M GY K+   T+  +  DGW
Sbjct:  210 TTGPSKGVVATHRSLISMVQIIMTRFRLEGSDKTETFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVAMVAHPKPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGAS------------TDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVN--RTGELWIRGPYVMKGYFKNAEATQSTLTPDGW 427          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   R + V +V   +D   P     ++ V L  LP+FH    +     G+ A G   V +RKFD   +  + R+HGVT     P ++  I+  PR  ++ L + + ++ +GA P    L   F  +    ++  GYG+TE   ++  C          A E   +KS      V   E+ ++D ++G ++  + +  GEI  RG  +M GYL DP  T+  +   GW
Sbjct:  201 TTGLPKGVMLTHRSL-VTSVAQQVDGENPNLYFRREDVVLCLLPLFHIYSLNSVLLAGLRA-GSAIVIMRKFDLGALVDLTRRHGVTVAPFVPPIVVEIAKSPRVTADDLAS-IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCL-------AFAKEPFEVKSGSCGTVVRNAELKIVDPDTGATLGRNQS--GEICIRGEQIMKGYLNDPESTKNTIDKGGW 424          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: MENE_BACP2 (2-succinylbenzoate--CoA ligase OS=Bacillus pumilus (strain SAFR-032) GN=menE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 68/230 (29.57%), Postives = 100/230 (43.48%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISN-LPRSEPLRNPVH-ILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATER----ARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV       F   V S ++  + +   +L  LP+FH +G S  +     G T V  +KFD   +   I QH VT +    VV  M+S  L R E   + +  +L  G P P A+L  ++  GF V   YG+TET   +V+ A +    +L +  +      +K + G R +C                H     GEI+ +G ++M GYL     T     D GW
Sbjct:  154 TTGRPKGVEQTFGNHFHSAVSSALNMGLREDDRWLIALPLFHISGLSALFKSVIYGMTVVLHQKFDVDEVIGSIEQHRVTMI---SVVQTMLSRLLSRLEECPSSLRCLLLGGGPAPLAMLQESKEKGFPVFQSYGMTETCSQIVTLAPEFSVEKLGSAGKPLFGCELKIQDGTR-IC------------RPFEH-----GEIMVKGANVMKGYLYREESTAAAF-DQGW 361          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 69/238 (28.99%), Postives = 109/238 (45.80%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASL-GEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   R +   +V   +D   P        V L  LPMFH    +        VG   V +R+FD A +  ++ +H VT    AP+V  ++  + +SE       + V ++ +GA P    +   F  +  G ++  GYG+TE   ++  C          A E  ++KS      V   E+ +ID ++G S+   G +L GEI  RG  +M GYL +P  T+  +  +GW
Sbjct:  212 TTGLPKGVMLTHRSLST-SVAQQVDGENPNIGLHAGDVILCALPMFHIYSLNTIMMCGLRVGAAIVVMRRFDLAAMMDLVERHRVTI---APLVPPIVVAVAKSEAAAARDLSSVRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGPVLSMCL-------AFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSL---GRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGW 435          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 65/234 (27.78%), Postives = 106/234 (45.30%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V ++   +D   P        V L  LPMFH     +        G   + + +F+  ++  +I+++ VT +  AP V+      P +E    + V I+ +GA      L     L F   +   GYG+TE+  +  S A+        A    + KS      +   E+ V+D+E+G+S+  + +  GEI  RG  +M GYL DP  T + +  DGW
Sbjct:  221 TTGLPKGVMITHKGL-VTSIAQKVDGENPNLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVPVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTESGTVAKSLAF--------AKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKS--GEICVRGHQLMKGYLNDPEATARTIDKDGW 443          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 68/237 (28.69%), Postives = 110/237 (46.41%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D   P        V L  LP+FH    +     A   G   + ++KF+      +I+++ VT    AP+V  ++ ++ +S  +     + V I+ +GA P    L    R      +   GYG+TE AG V++       N  P      +KS      V   +I ++D+E+G S+ H+ A  GEI  RG  +M GY+ DP  T   + ++GW
Sbjct:  192 TTGLPKGVMLTHKGL-VSSVAQQVDGENPNLYFHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTV---APIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTE-AGPVLAMNLAFAKNPFP------VKSGSCGTVVRNAQIKILDTETGESLPHNQA--GEICIRGPEIMKGYINDPESTAATIDEEGW 415          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 61/232 (26.29%), Postives = 101/232 (43.53%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFV--MTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCL-RKFDAAVIYIMIRQHGVTHMCGAPVVLN--MISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESL-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL-KDPNGTRKCMKDDGWF 675
            TT +PKGV++  R   +  MT       ++  +   L  +PMFH N W  P+  A VG   V      D A +  +I   GV+   G PVV    + +        ++   ++  G+  PA+++     + G  V H +G+TE +    +         L   E+  ++  QG R     E+ +++ E G+ +  DG S G ++ RG  ++  Y   DP  T      DGWF
Sbjct:  188 TTGNPKGVLYSHRSTVLHSMTTAMPDTLNLSARDTILPVVPMFHVNAWGTPYSAAMVGAKLVLPGPALDGASLSKLIASEGVSIALGVPVVWQGLLAAQAGNGSKSQSLTRVVVGGSACPASMIREFNDIYGVEVIHAWGMTELSPFGTANTPLAHHVDLSPDEKLSLRKSQG-RPPYGVELKIVNDE-GIRLPEDGRSKGNLMARGHWVIKDYFHSDPGST----LSDGWF 413          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 70/234 (29.91%), Postives = 106/234 (45.30%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIP-----KQPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D   P     +  V L  LPMFH     S       VG T + + KF+  ++   I++  VT     P ++  I+  P +E    + V ++ +GA P    L    S  F    +  GYG+TE AG V++ +         A E   +KS      V   E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T   +  DGW
Sbjct:  206 TTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFNRDDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTE-AGPVLAMSLGF------AKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKP--GEICIRGNQIMKGYLNDPLATASTIDKDGW 429          
The following BLAST results are available for this feature:
BLAST of CB250289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
4CL3_ORYSJ9.614e-1729.66Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL5_ORYSJ1.813e-1529.83Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CLL4_ORYSJ2.005e-1428.024-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CL4_ORYSJ2.005e-1428.81Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
MENE_BACP21.437e-1229.572-succinylbenzoate--CoA ligase OS=Bacillus pumilus... [more]
4CL1_ORYSJ1.876e-1228.99Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CL4_ARATH3.201e-1227.784-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CL_PINTA4.180e-1228.694-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
ALKK_PSEOL1.588e-1126.29Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
4CL2_ARATH2.075e-1129.914-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0065 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ085 similar to AMP-binding protein (BAB09604), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250289 ID=CB250289; Name=CB250289; organism=Citrus sinensis; type=EST; length=675bp
ACGACGTCGTCTCCGAAAGGCGTCGTCCATTGTCGCCGTGGCATTTTCGT
CATGACCGTCGATTCTTTAATCGATTGGTCAATTCCGAAACAGCCGGTAT
ACTTGTGGACCCTACCGATGTTTCACGCTAACGGCTGGAGTTACCCGTGG
GGGATGGCGGCCGTTGGTGGGACTAACGTTTGCTTACGGAAATTCGACGC
CGCCGTTATCTATATAATGATTCGACAACACGGCGTCACACACATGTGTG
GAGCCCCAGTTGTGCTCAACATGATATCAAATTTACCCAGAAGCGAACCG
TTGAGGAACCCGGTTCATATTTTGACAGCCGGAGCTCCACCACCGGCGGC
GGTGCTTTTCAGAACAGAGTCACTGGGTTTCTTAGTGAGCCACGGGTATG
GTTTAACGGAAACTGCGGGTCTTGTCGTGTCATGTGCGTGGAAAAATAAG
TGGAATAGGTTACCGGCGACGGAGAGGGCGAGGATGAAATCGAGACAAGG
AGTGAGGACGGTTTGCTTCACCGAAATAGACGTTATAGATTCCGAGTCAG
GACTCAGTGTGAGTCACGACGGGGCATCGCTCGGTGAAATCGTGTTCAGA
GGCGGAAGCATGATGCTTGGTTATCTCAAAGACCCTAACGGGACCCGCAA
GTGCATGAAGGATGATGGTTGGTTT
back to top