CB293508

Overview
NameCB293508
Unique NameCB293508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5346 contig Csv1_Contig5346:527..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 68/217 (31.34%), Postives = 112/217 (51.61%), Query Frame = 2
Query:  137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ---GFPS-SQPQMVD----SSLNTSARTGLSGYQTAPTNL 754
            E FSSS + A+  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+ + +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E +  HL  SK+  Q   G PS S P M +    S  N     GL+  Q    NL
Sbjct:    7 ESFSSSSYGAAGGYTQSPGGFGSPTPSQA----EKKSRAR-AQHIVPCTISQLLSATLTDEV---FKIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNFSGNNFMPANGLTVVQNQVLNL 215          
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_MOUSE (Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 59/208 (28.37%), Postives = 105/208 (50.48%), Query Frame = 2
Query:  137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQTAPTN 751
            E F+SS +     +  S GGF    P Q+       +R R +Q +VP T+  +  A+ + +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E +  H+  SK   Q   + +P M +  ++ S     SG    P N
Sbjct:    7 ESFTSSTYGGRGGYTQSPGGFGSPTPSQA----EKKSRVR-AQHIVPCTISQLLSATLTDEV---FRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQA-SAGRPSMSNPGMSES--FNFSGNNFMPAN 203          
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 56/193 (29.02%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ----GFPSSQPQMVDS 694
            E + SS +  +  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+   +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I  H+  SK+  Q      P S P M ++
Sbjct:    7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEA 191          
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 56/193 (29.02%), Postives = 100/193 (51.81%), Query Frame = 2
Query:  137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ----GFPSSQPQMVDS 694
            E + SS +  +  +  S GGF    P Q+       +R+R +Q +VP T+  +  A+   +    F I  +EI+ VT+VG++ + E+  +++ + +DD T   +  ++W      + E   +    YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I  H+  SK+  Q      P S P M ++
Sbjct:    7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEA 191          
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  116 F*APGFSEMFSSSQFDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHL 634
            F  PG+   F+S    A +   GGG   ++  QS+  PS   +      L PVT+K I  AS    D + F I+G+E+  VT VG++ N   + ++  + ++DGTG +  + W  E  D   +  +    YVR+ GN+K F GK  I +  +R + + +EV  H++E I  HL
Sbjct:    6 FGKPGYGPDFNS----AFSPGMGGGAGFNEYDQSSQ-PSVDRQQGAGNKLRPVTIKQILNASQVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHW--EHIDA--LSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHL 168          
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_YEAST (Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 50/179 (27.93%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  140 MFSSSQFDASNAFSGGGFMPSQP-PQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--------------TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFH 631
            M +   ++  ++ +GGGF  S+  P S +  ++T  +     L PVT+K I E+     D   F+ +  E+ +V  VG+V N  +  +++  T++DGTG++  ++W+ +  D              ++  +  + G YV++ G LK F GKK I    ++P+ +F+EV  H++E I  H
Sbjct:    1 MATYQPYNEYSSVTGGGFENSESRPGSGESETNTRVNT----LTPVTIKQILESKQDIQD-GPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174          
The following BLAST results are available for this feature:
BLAST of CB293508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFA2_RAT1.579e-1731.34Replication protein A 32 kDa subunit OS=Rattus nor... [more]
RFA2_MOUSE1.478e-1528.37Replication protein A 32 kDa subunit OS=Mus muscul... [more]
RFA2_HUMAN2.520e-1529.02Replication protein A 32 kDa subunit OS=Homo sapie... [more]
RFA2_PONAB3.292e-1529.02Replication protein A 32 kDa subunit OS=Pongo abel... [more]
RFA2_SCHPO5.615e-1532.37Replication factor A protein 2 OS=Schizosaccharomy... [more]
RFA2_YEAST1.634e-1427.93Replication factor A protein 2 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293508 ID=CB293508; Name=CB293508; organism=Citrus sinensis; type=EST; length=818bp
GCACGTGGGCGGGAAATAAGCAAAGAACACTGGCGGGAAACCCTAAAATA
AATCTCGTCTACGCGCAAAAGCTCTACAAGGATCAAATTTGCACTTGCAA
CTGTCAATTCTTTAATTTTAAGCTCCAGGGTTTTCAGAGATGTTTTCGAG
TAGCCAATTCGACGCCAGCAATGCATTTTCCGGCGGCGGATTCATGCCTT
CTCAGCCGCCTCAGTCCGCCGATTATCCTTCTTCTACGGCAAGAAGTCGT
GATTCTCAAGGGTTAGTACCAGTGACAGTGAAGATGATAAGTGAAGCTTC
CCACTCTGGTGATGATAAATCGAATTTTATGATCAATGGTTTGGAGATTA
CTAATGTTACATTGGTTGGGCTGGTGTATAACAAAGAAGAAAGAGCTTCT
GATGTTAATTTCACTCTAGACGATGGAACCGGGAGAGTTGTATGTAAAAG
ATGGGCAAGTGAGGTTTTTGACACCAGGGAAATGGAGGCCATACAAGATG
GAATGTACGTACGTCTCATTGGGAACTTGAAAAGCTTTCAAGGGAAAAAA
CAGATTGTTGCCTTCTCTGTGAGGCCAGTGACAAACTTTGATGAGGTTAC
TTGCCACTATATTGAATGCATATACTTTCACTTGCAAAATTCCAAGTCAC
AGGTACAAGGTTTTCCTTCATCTCAGCCTCAGATGGTCGATTCATCACTG
AACACTTCTGCCCGAACCGGTTTAAGTGGATATCAGACAGCCCCAACTAA
TCTCTCTTCACAATTTGGCGTTGACGGACTGAAGGATTGTGACCAAATGA
TCCTTGACTATCTGCAGC
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