CB293508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_RAT (Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17 Identity = 68/217 (31.34%), Postives = 112/217 (51.61%), Query Frame = 2 Query: 137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ---GFPS-SQPQMVD----SSLNTSARTGLSGYQTAPTNL 754 E FSSS + A+ + S GGF P Q+ +R+R +Q +VP T+ + A+ + + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E + HL SK+ Q G PS S P M + S N GL+ Q NL Sbjct: 7 ESFSSSSYGAAGGYTQSPGGFGSPTPSQA----EKKSRAR-AQHIVPCTISQLLSATLTDEV---FKIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNFSGNNFMPANGLTVVQNQVLNL 215
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_MOUSE (Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15 Identity = 59/208 (28.37%), Postives = 105/208 (50.48%), Query Frame = 2 Query: 137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQTAPTN 751 E F+SS + + S GGF P Q+ +R R +Q +VP T+ + A+ + + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E + H+ SK Q + +P M + ++ S SG P N Sbjct: 7 ESFTSSTYGGRGGYTQSPGGFGSPTPSQA----EKKSRVR-AQHIVPCTISQLLSATLTDEV---FRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQA-SAGRPSMSNPGMSES--FNFSGNNFMPAN 203
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_HUMAN (Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15 Identity = 56/193 (29.02%), Postives = 100/193 (51.81%), Query Frame = 2 Query: 137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ----GFPSSQPQMVDS 694 E + SS + + + S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I H+ SK+ Q P S P M ++ Sbjct: 7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEA 191
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_PONAB (Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15 Identity = 56/193 (29.02%), Postives = 100/193 (51.81%), Query Frame = 2 Query: 137 EMFSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ----GFPSSQPQMVDS 694 E + SS + + + S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+SFQ KK +VAF + P+ + +E T H +E I H+ SK+ Q P S P M ++ Sbjct: 7 ESYGSSSYGGAGGYTQSPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEA 191
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_SCHPO (Replication factor A protein 2 OS=Schizosaccharomyces pombe GN=ssb2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15 Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = 2 Query: 116 F*APGFSEMFSSSQFDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHL 634 F PG+ F+S A + GGG ++ QS+ PS + L PVT+K I AS D + F I+G+E+ VT VG++ N + ++ + ++DGTG + + W E D + + YVR+ GN+K F GK I + +R + + +EV H++E I HL Sbjct: 6 FGKPGYGPDFNS----AFSPGMGGGAGFNEYDQSSQ-PSVDRQQGAGNKLRPVTIKQILNASQVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHW--EHIDA--LSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHL 168
BLAST of CB293508 vs. ExPASy Swiss-Prot
Match: RFA2_YEAST (Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14 Identity = 50/179 (27.93%), Postives = 93/179 (51.96%), Query Frame = 2 Query: 140 MFSSSQFDASNAFSGGGFMPSQP-PQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--------------TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFH 631 M + ++ ++ +GGGF S+ P S + ++T + L PVT+K I E+ D F+ + E+ +V VG+V N + +++ T++DGTG++ ++W+ + D ++ + + G YV++ G LK F GKK I ++P+ +F+EV H++E I H Sbjct: 1 MATYQPYNEYSSVTGGGFENSESRPGSGESETNTRVNT----LTPVTIKQILESKQDIQD-GPFVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174 The following BLAST results are available for this feature:
BLAST of CB293508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293508 ID=CB293508; Name=CB293508; organism=Citrus sinensis; type=EST; length=818bpback to top |