CF417520

Overview
NameCF417520
Unique NameCF417520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7344 contig Csv1_Contig7344:142..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_ORYSJ (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.872e-18
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGSG 182
            PLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIPINNIIVGSG
Sbjct:   10 PLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 69          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: S61G1_ARATH (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            PLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIPINNIIVG+
Sbjct:   10 PLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGA 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: S61G3_ARATH (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana GN=SEC61G3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.185e-16
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            PLRDFAK S+RLV+RCHKPDRKEFTKVA RTAI            KL+FIPINNIIVGS
Sbjct:   10 PLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_BRABE (Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 38/59 (64.41%), Postives = 39/59 (66.10%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R FAKDS RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:   10 PARQFAKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: S61G1_GRYOR (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis GN=SEC61G PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:   10 PGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_XENLA (Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: S61G2_DROME (Protein transport protein Sec61 gamma-2 subunit OS=Drosophila melanogaster GN=Sec61gamma PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R FAKDS+RLVKRC KPDRKEF K+A  TA+            KLI IPINNIIVGS
Sbjct:   10 PGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFCIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: S61G1_DROME (Protein transport protein Sec61 gamma-1 subunit OS=Drosophila melanogaster GN=SEC61G1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P R FAKDS+RLVKRC KPDRKEF K+A  TA+            KLI IPINNIIVGS
Sbjct:   10 PGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_CIOIN (Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.500e-12
Identity = 37/59 (62.71%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 179
            P + FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:   10 PGKQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of CF417520 vs. ExPASy Swiss-Prot
Match: SC61G_HARAN (Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12
Identity = 37/58 (63.79%), Postives = 38/58 (65.52%), Query Frame = 3
Query:    3 PLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 176
            P R F KDS+RLVKRC KPDRKEF KVA  TAI            KLI IPINNIIVG
Sbjct:   10 PSRQFVKDSIRLVKRCTKPDRKEFQKVAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
The following BLAST results are available for this feature:
BLAST of CF417520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SC61G_ORYSJ8.872e-1875.00Protein transport protein Sec61 subunit gamma OS=O... [more]
S61G1_ARATH1.976e-1774.58Protein transport protein Sec61 subunit gamma-1 OS... [more]
S61G3_ARATH2.185e-1671.19Protein transport protein Sec61 subunit gamma-3 OS... [more]
SC61G_BRABE8.593e-1364.41Protein transport protein Sec61 subunit gamma OS=B... [more]
S61G1_GRYOR1.122e-1264.41Protein transport protein Sec61 subunit gamma OS=G... [more]
SC61G_XENLA1.466e-1262.71Protein transport protein Sec61 subunit gamma OS=X... [more]
S61G2_DROME1.914e-1262.71Protein transport protein Sec61 gamma-2 subunit OS... [more]
S61G1_DROME1.914e-1262.71Protein transport protein Sec61 gamma-1 subunit OS... [more]
SC61G_CIOIN2.500e-1262.71Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_HARAN3.265e-1263.79Protein transport protein Sec61 subunit gamma OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-450 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417520 ID=CF417520; Name=CF417520; organism=Citrus sinensis; type=EST; length=431bp
ATCCGCTCAGAGATTTCGCAAAAGACAGCTTGCGTCTCGTCAAGAGGTGT
CACAAGCCCGATCGCAAAGAATTCACGAAGGTTGCGTTCCGTACGGCGAT
CGGATTCGTTGTCATGGGATTCGTAGGTTTCTTCGTCAAGTTGATCTTCA
TCCCTATCAACAATATTATTGTTGGATCTGGATAAGGCTGCAGAGTTGCT
GGCTTTGATGATGGAAGTTATCAGCAGATTGATTCACACCCTTCAACGAA
GGAATGAGTTAACCCGTTTAGAATTTTATTAGACAGTACCTCAAATATGC
CTTGAATCTTTTTGAATTAGACTTTATATTTGCTTTTAAGTTGACTTACT
CCGGAAATATTTTACTTTTGTCGAAAATTAGTTTGTTCTTACAGATTGGA
ACTTGCTACGTTAAATCATTTTGTTTACTTT
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