CF835348

Overview
NameCF835348
Unique NameCF835348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4842 contig Csv1_Contig4842:99..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317
            YG+  PPD+   +SL V N+T+RT+ D L  +FEKYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:    3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 3
Query:   30 PPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 290
            PPD+    +L V N+T+RT+ D L  +FEKYG+V DV+IPR+  T   RGFAFVR+    +AQ A   +DG  +DGRE+ VQ A+YG
Sbjct:    7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 3
Query:   33 PDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG-PNAEKIQQG 317
            PDI   +SL + N++++TT +DL   FE+YG + DV IPRD+ +  S+GF FVR+    +A+ A+DR DG++VDGRE+ V  AKY  P+ E+  +G
Sbjct:   13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108          
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    6 MSHYGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA---KYGPNAEKIQQGRIV 326
            MS Y +  PP+    +SL V N+   T ++DL   F +YG +VDV++P D  T   RGFA+V+++   +A+ A+  LD + + GR+I +QFA   +  PN  K ++GR V
Sbjct:    1 MSRYLR--PPN----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104          
The following BLAST results are available for this feature:
BLAST of CF835348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SFRS2_RAT6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN6.778e-2251.46Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]
SFR2B_HUMAN6.565e-1750.57Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]
RSP4_CAEEL6.565e-1745.83Probable splicing factor, arginine/serine-rich 4 O... [more]
SF13A_MOUSE5.383e-1138.18Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835348 ID=CF835348; Name=CF835348; organism=Citrus sinensis; type=EST; length=739bp
AAAAGATGTCCCATTACGGCAAATCAGGACCCCCGGATATCAGAGACACT
TCCTCTCTCCTCGTCCTCAACATCACTTTCCGCACCACCGCAGATGATCT
CTTCCCTCTATTCGAAAAGTACGGGAAGGTCGTCGATGTCTTCATCCCTC
GCGACCGAAGGACTGGTGATTCGCGAGGTTTTGCTTTTGTTCGATACAAG
TATGCGGATGAGGCGCAAAAGGCTGTGGACAGGCTTGATGGGAGAGTTGT
GGATGGAAGAGAAATTACAGTTCAGTTCGCCAAGTACGGTCCCAATGCAG
AGAAAATTCAACAAGGAAGGATAGTGGAATCATCTTCAAAGTCAAAAGGC
AGGTCTAGAAGTCGCAGTCCTCGTCCAAGGTATAGGGATGAACACAGGGA
CAAGGATTACAGGAGGAGAAGTCGCAGTAGAAGCAGGGAAAGATATGATC
GTGACAGGTACCGCAGCAAGGAAAGAGATCATCGTCGCCGAAGCCGGAGC
CGCAGTGCCAGTCCTGATCGTCACAAAAACCATGGGAGAGGCAAATACGA
TGAAGAGCGCCGCAGTAGGAGCCGATCTTACGAAAGTGCCTCCCCCCCTC
GGCATAGTCCCAATTCTAAAAGGAGCCCATCTCCACGTAAGACTCATAAG
GGTGAAATCAACCCTGATGAACGTTCTCCTGCTCTCAAACGTGTTTCACC
AGATGGTCGGCGATCTGTTTCTCGAAGTCTATCTCCACG
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