CF835348
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 3 Query: 15 YGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAEKIQQG 317 YG+ PPD+ +SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+ +A+ A+D +DG V+DGRE+ VQ A+YG P++ ++G Sbjct: 3 YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17 Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 3 Query: 30 PPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 290 PPD+ +L V N+T+RT+ D L +FEKYG+V DV+IPR+ T RGFAFVR+ +AQ A +DG +DGRE+ VQ A+YG Sbjct: 7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17 Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 3 Query: 33 PDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG-PNAEKIQQG 317 PDI +SL + N++++TT +DL FE+YG + DV IPRD+ + S+GF FVR+ +A+ A+DR DG++VDGRE+ V AKY P+ E+ +G Sbjct: 13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11 Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 3 Query: 6 MSHYGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA---KYGPNAEKIQQGRIV 326 MS Y + PP+ +SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++ +A+ A+ LD + + GR+I +QFA + PN K ++GR V Sbjct: 1 MSRYLR--PPN----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104 The following BLAST results are available for this feature:
BLAST of CF835348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835348 ID=CF835348; Name=CF835348; organism=Citrus sinensis; type=EST; length=739bpback to top |