CK935628

Overview
NameCK935628
Unique NameCK935628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935628 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  131 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 394
            SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:   41 SAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of CK935628 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 2
Query:  131 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 394
            SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:   49 SAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of CK935628 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.970e-24
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 2
Query:  131 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 394
            SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:   50 SAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of CK935628 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.617e-24
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  131 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 394
            SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:   46 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of CK935628 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  131 SAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 394
            SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:   47 SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
The following BLAST results are available for this feature:
BLAST of CK935628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI1.522e-2869.32HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN1.861e-2663.64HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA2.970e-2462.50HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE6.617e-2459.38DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT4.289e-2356.57HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004553_E04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935628 ID=CK935628; Name=CK935628; organism=Citrus sinensis; type=EST; length=819bp
GGGAACAAAGCATATCCTTTTGTCTTCCAAAAACCCTAACCTCACCAGGT
AACTCGCTGAGTCTCTCCGGCGCTGACTCAGTCCGAGTCGCCCCGATTTT
CACCGATTCTCACCGGTTTGCATCATTTTTAGTGCTTTCTTCGTTTTCAT
GGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCTG
TTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGAA
GATGAGAAAGCGCCATTCGTTGAAAGGGCTGAGAAAAGAAAGTCTGATTA
CAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAATG
CTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGAG
GATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGACTAGAGAATGGC
AGCGAAGGATTCAAAAATGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATGGATGGATATGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCCTGTTGCTTTATTCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTTTTGAATGTCAATTGCGATTATAGCAAT
TTGTGTTCAGGCAGGCAGTTGCCTACTGAAAATATTTGACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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