Clementine/SweetBloodOrange-F1 | Citrus Genome Database

Map Overview


Name	Clementine/SweetBloodOrange-F1
Species	Citrus spp.
Analysis method	Kruskal-Wallis
Software	MapQTL 6
Map type	genetic
Population type	F1
Population size	77
Map unit	cM
Maternal parent	SRA 63
Paternal parent	SRA 301
Number of loci	710
Number of QTL	20
Number of linkage groups	9
Publication	[view all]
Contact	Patrick Ollitrault Francois Luro

Stock

Name

Type

Details

SRA 63/SRA 301-F1

population

Contact

Name

Details

Patrick Ollitrault

First name:	Patrick
Last name:	Ollitrault
Title:	Researcher
Institution:	CIRAD
Address:	Unite de Recherche Multiplication Vegetative, Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), Montpellier 34398, France
Country:	France
Email:	patrick.ollitrault@cirad.fr
Phone:	+33(0)467615971
Fax:	+33(0)467615666
Last update:	Jun 2020

Francois Luro

First name:	Francois
Last name:	Luro
Title:	Researcher
Institution:	INRA
Address:	1INRA, Unite de Recherche GEQA, INRA San Giuliano, 20230 San Nicolao, France
Country:	France
Email:	luro@corse.inra.fr

Publication


Year	Publications
2023	Ferrer V, Costantino G, Paymal N, Quinton C, Perdomo EC, Paoli M, Mournet P, Ollitrault P, Tomi F, Luro F. Inheritance and Quantitative Trait Loci Mapping of Aromatic Compounds from Clementine (Citrus × clementina Hort. ex Tan.) and Sweet Orange (C. × sinensis (L.) Osb.) Fruit Essential Oils.. Genes. 2023 Sep 14; 14(9).

Map Loci

This map contains 710 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_1171206	scaffold_1_1171206	marker_locus	0 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_964661	scaffold_1_964661	marker_locus	6.63 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_1452360	scaffold_1_1452360	marker_locus	11.11 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_2440649	scaffold_1_2440649	marker_locus	13.14 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_2843529	scaffold_1_2843529	marker_locus	22.74 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_2805751	scaffold_1_2805751	marker_locus	23.2 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_3028911	scaffold_1_3028911	marker_locus	25.39 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_2483437	scaffold_1_2483437	marker_locus	27.02 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_3219196	scaffold_1_3219196	marker_locus	29.66 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_4054995	scaffold_1_4054995	marker_locus	40.01 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_2096888	scaffold_1_2096888	marker_locus	40.29 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_4385283	scaffold_1_4385283	marker_locus	43.12 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_4846181	scaffold_1_4846181	marker_locus	49.01 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_4613213	scaffold_1_4613213	marker_locus	51.1 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_6414006	scaffold_1_6414006	marker_locus	56.92 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_8983136	scaffold_1_8983136	marker_locus	59.35 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_6854373	scaffold_1_6854373	marker_locus	61.6 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_14391203	scaffold_1_14391203	marker_locus	62.14 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_6612487	scaffold_1_6612487	marker_locus	62.25 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_10400304	scaffold_1_10400304	marker_locus	63.57 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_11872962	scaffold_1_11872962	marker_locus	64.19 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_14702703	scaffold_1_14702703	marker_locus	64.58 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_14529862	scaffold_1_14529862	marker_locus	64.75 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_9057730	scaffold_1_9057730	marker_locus	65.39 cM
Clementine/SweetBloodOrange-F1.LG1	scaffold_1_12980947	scaffold_1_12980947	marker_locus	65.61 cM

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Last

Map QTL

This map contains 20 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Clementine/SweetBloodOrange-F1.LG5	qAPICONC.Clementine/SweetBloodOrange.LG5	QTL	5 cM	27 cM	21 cM
Clementine/SweetBloodOrange-F1.LG8	qAPICONC.Clementine/SweetBloodOrange.LG8	QTL	67 cM	73 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qSACONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qBPICONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG8	qOCTCONC.Clementine/SweetBloodOrange.LG8	QTL	46 cM	77 cM	75 cM
Clementine/SweetBloodOrange-F1.LG9	qLCONC.Clementine/SweetBloodOrange.LG9	QTL	89 cM	95 cM	90 cM
Clementine/SweetBloodOrange-F1.LG8	qLCONC.Clementine/SweetBloodOrange.LG8	QTL	65 cM	67 cM	67 cM
Clementine/SweetBloodOrange-F1.LG5	qCICONC.Clementine/SweetBloodOrange.LG5	QTL	21 cM	37 cM	37 cM
Clementine/SweetBloodOrange-F1.LG8	qDECONC.Clementine/SweetBloodOrange.LG8	QTL	46 cM	78 cM	77 cM
Clementine/SweetBloodOrange-F1.LG5	qNCONC.Clementine/SweetBloodOrange.LG5	QTL	28 cM	30 cM	30 cM
Clementine/SweetBloodOrange-F1.LG5	qGECONC.Clementine/SweetBloodOrange.LG5	QTL	28 cM	42 cM	30 cM
Clementine/SweetBloodOrange-F1.LG8	qL10CONC.Clementine/SweetBloodOrange.LG8	QTL	48 cM	77 cM	52 cM
Clementine/SweetBloodOrange-F1.LG8	qDOCONC.Clementine/SweetBloodOrange.LG8	QTL	48 cM	78 cM	77 cM
Clementine/SweetBloodOrange-F1.LG3	qVALCONC.Clementine/SweetBloodOrange.LG3	QTL	96 cM	104 cM	104 cM
Clementine/SweetBloodOrange-F1.LG6	qAFCONC.Clementine/SweetBloodOrange.LG6	QTL	34 cM	51 cM	51 cM
Clementine/SweetBloodOrange-F1.LG1	qDCACONC.Clementine/SweetBloodOrange.LG1	QTL	63 cM	79 cM	79 cM
Clementine/SweetBloodOrange-F1.LG6	qDCACONC.Clementine/SweetBloodOrange.LG6	QTL	66 cM	73 cM	73 cM
Clementine/SweetBloodOrange-F1.LG8	qASCONC.Clementine/SweetBloodOrange.LG8	QTL	34 cM	64 cM	63 cM
Clementine/SweetBloodOrange-F1.LG5	qPEO.Clementine/SweetBloodOrange.LG5	QTL	3 cM	21 cM	8 cM
Clementine/SweetBloodOrange-F1.LG8	qPEO.Clementine/SweetBloodOrange.LG8	QTL	0 cM	13 cM	9 cM

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