DN135168
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.838e-32 Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 332 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL DA R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.838e-32 Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 332 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL DA R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 8.536e-30 Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 335 MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VDV+ L D +R EAR Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.507e-26 Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 329 MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN FIRGS VRYV L + VD +LL DATRRE Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25 Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 329 MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++ FIRGSVVRYV + VD LL DA RR+ Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.048e-11 Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATR 323 MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + +++ + +++ C IRGS ++ V+L +G++ ++ +ATR Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90 The following BLAST results are available for this feature:
BLAST of DN135168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN135168 ID=DN135168; Name=DN135168; organism=Citrus sinensis; type=EST; length=551bpback to top |