CV885160

Overview
NameCV885160
Unique NameCV885160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:397..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.006e-69
Identity = 133/179 (74.30%), Postives = 146/179 (81.56%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            LKMLEMDAEYEG+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P             KRYNLKKLTY+ERKARLVERL ALN
Sbjct:  110 LKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 8.837e-66
Identity = 124/179 (69.27%), Postives = 145/179 (81.01%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            LKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN            KRYNLKKLTYEERK +L+ER+KALN
Sbjct:  110 LKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 3.358e-65
Identity = 122/179 (68.16%), Postives = 145/179 (81.01%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            LKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN            KRYNLKKLTYEERK +L+ER+KALN
Sbjct:  110 LKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.105e-63
Identity = 118/179 (65.92%), Postives = 139/179 (77.65%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            LK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN
Sbjct:  111 LKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 4.105e-63
Identity = 118/179 (65.92%), Postives = 139/179 (77.65%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            LK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN
Sbjct:  111 LKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.194e-62
Identity = 118/179 (65.92%), Postives = 138/179 (77.09%), Query Frame = -2
Query:  265 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 801
            L +  +D EYEG+VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN
Sbjct:  111 LTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.018e-37
Identity = 82/178 (46.07%), Postives = 113/178 (63.48%), Query Frame = -2
Query:  271 LKMLEMDAEYEGHVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKA 801
            LK L++D  Y G  E  G++Y+VE  ++    FR  LD GL++TTTG R+F           +IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++           KR+N  KLT  ERK R V+++KA
Sbjct:  110 LKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.619e-37
Identity = 77/106 (72.64%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  265 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALN 582
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+            KRYNLKKLTYEERKA+L+ERL ALN
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.920e-36
Identity = 78/178 (43.82%), Postives = 113/178 (63.48%), Query Frame = -2
Query:  268 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKAL 801
            LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F           ++PHSE RF GF ++SK  +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+K HA IRADP+            KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  110 LKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPS--PSAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of CV885160 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.508e-36
Identity = 78/178 (43.82%), Postives = 115/178 (64.61%), Query Frame = -2
Query:  268 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKAL 801
            LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F           ++PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+KVH+AIRAD +            KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  110 LKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADAS--PAAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
The following BLAST results are available for this feature:
BLAST of CV885160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA5.006e-6974.3060S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ARATH8.837e-6669.2760S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ARATH3.358e-6568.1660S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ4.105e-6365.9260S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI4.105e-6365.9260S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ1.194e-6265.9260S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_LYSTE1.018e-3746.0760S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_SOLME8.619e-3772.6460S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_CAEBR1.920e-3643.8260S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL2.508e-3643.8260S ribosomal protein L5 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885160 ID=CV885160; Name=CV885160; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTCCAAGTAAAAATATTTGTTGCATTGTCTAATTT
CAGCACATTGACTACAAAAGATTGAAATACTGGAATTTCAGCAAACAACC
AGGTCTCATCAGCATTTGAAAGCTCATAGAAACAACACTGTTCTCAACCT
ATCAAACAAGCCAGGTTCTTTAATTTTAGTAATCTCTGAAAATAACCTAT
TGAACTAAGAAACAAAAACTTCCTAGTATCGCATTCACTCATCGGCTTCA
TCGTCTTCAGCAGCATTGAGTGCTTTCAACCTTTCAACTAACCTGGCTTT
CCTTTCCTCGTACGTCAGTTTCTTCAGGTTGTACCTCTTGGGCTCTGCTG
GAGGCTTCTTCTCAAATTTCTTCTGGTTAGGGTCTGCACGGATGGCAGCA
TGTACCTTCTTGTACAACTCTTCAAGGTTATCAGCCTCAATACCTCTCTT
GATGTATTCACAAAAGTGAGACTGGTACTTCTCTGGCTCATCTTCCATCA
AAGTCCTCATGTAGGCAGCGACATGACCACAATAGATGTATTTACGGTGA
ACTTCAGCGTCAAGTTGCTTACTATCCTTACTGAATCCAGCAAATCTCTT
CTCACTGTGAGGGATATCAAGTCCACCATCCAATGCACCCTTAAGAGCGC
CAAAGACACGGTTACCAGTAGTTGTTTTCACAAGACCAACATCAAGCAGG
GCACGGAAAGGCCTCCTGTTCTCAGTTGGCTCAACTGAATAGTCCTCTCC
TGTTGCCTCAACGTGCCCCTCATACTCAGCATCCATCTCAAGCATTTTCA
GG
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