CN189431

Overview
NameCN189431
Unique NameCN189431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_HUMAN (DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.903e-58
Identity = 106/229 (46.29%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            + +EDL SI + GFRGEALAS+++V HVT+TT T      YR SY DG ++  PK CA  +GTQI VE+LFYN+  RRK L+N S++Y KI++++ R ++H+  +SFS +K G   ADV ++  +S +D+IR+++G +V+  L+++      +  +  FKM+GY+SN+NY  KK   +LF+N RLVE   L++A+E VYAA  PK + PF+Y+S+ + P++VDVNV PT
Sbjct:   86 QSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPT 310          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_MOUSE (DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.983e-57
Identity = 106/227 (46.70%), Postives = 161/227 (70.93%), Query Frame = 2
Query:    8 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +EDL SI + GFRGEALAS+++V HVT+TT T      YR SY DG ++  PK CA  +GT I VE+LFYN+I RRK L+N S++Y KI++++ R +IH++ +SFS +K G   +DV ++  ++ +D+IR+++G +V+  L+++      +  +  FKM+GY+SN+NY  KK   +LF+N RLVE A L++A+E VYAA  PK + PF+Y+S+ + P++VDVNV PT
Sbjct:   88 FEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVSDVRTLPNATTVDNIRSIFGNAVSRELIEVGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPT 310          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_RAT (DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.740e-56
Identity = 104/227 (45.81%), Postives = 159/227 (70.04%), Query Frame = 2
Query:    8 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +EDL  I + GFRGEALAS+++V HVT+TT T      YR SY DG ++  PK CA  +GT I VE+LFYN+I R+K L+N S++Y KI++++ R +IH++ +SFS +K G   +DV ++  ++ +D+IR+++G +V+  L+++      +  +  FKM+GY+SN+NY  KK   +LF+N RLVE A LK+A+E VYAA  PK + PF+Y+ + + P++VDVNV PT
Sbjct:   88 FEDLAMISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRKKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVSDVRTLPNATTVDNIRSIFGNAVSRELIEVGC----EDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESAALKKAIEAVYAAYLPKNTHPFLYLILEISPQNVDVNVHPT 310          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_YEAST (DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae GN=MLH1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.871e-48
Identity = 101/230 (43.91%), Postives = 152/230 (66.09%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKT-TMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            +K+EDL  I++ GFRGEALAS+++V  VTVTT  K     +RVSY +G M   PK  A   GT I+VE+LF+N+ +R + L++ +D+Y+KI+D++ R AIH  ++ FSC+K G +   +    + +  D IRTV+  SVASNL+    S+  D +  +  +DG V N N+++KK+ + + F+N+RLV C  L+RA+  VY+   PK ++PFIY+ IV+ P  VDVNV PT
Sbjct:   83 QKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAWRVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIHSKDIGFSCKKFGDSNYSLSVKPSYTVQDRIRTVFNKSVASNLITFHISKVEDLN--LESVDGKVCNLNFISKKSISPIFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAAVDVNVHPT 310          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_SCHPO (Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe GN=mlh1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.089e-43
Identity = 91/234 (38.89%), Postives = 143/234 (61.11%), Query Frame = 2
Query:    8 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGV-------MENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            + DLQ +++ GFRGEALAS+++V  VTV T     +H ++  Y DG        M   P+ CA  +GT I  E+LFYN+ +R+  L+N S+++ +I+ L+ + AIH+  VSF+C+K G   A +   +  S+ D IR +YG  VAS+L      E   SS   F  +G++SN+++  KK+ ++LF+N+RLVE   L+ A+E  YA    K +  F+Y+S+ + PE +DVNV P+
Sbjct:   89 FNDLQHLQTFGFRGEALASISHVAKVTVVTKLSSDIHAWKAFYVDGALAPISPGMSPAPQPCAGKQGTVITAEDLFYNVRSRKSALKNGSEEFRRIMILVQKYAIHNDQVSFNCKKVGDTVASLSLSSRLSKADKIRHIYGPRVASHLRDFSLGE-GQSSIVGFSANGFISNADFQDKKSNLILFINNRLVESVELRHALEETYAKYLHKGASYFVYLSLNMSPEQLDVNVHPS 321          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MLH1_DICDI (DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.877e-40
Identity = 92/257 (35.80%), Postives = 150/257 (58.37%), Query Frame = 2
Query:    5 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVM--------ENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRL--DSIRTVYGVSVASNLV-----------------QLEASEYNDSS--SFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            K+EDL+SI+S GFRGEAL+S+++V H+ + T T      YR  Y +G +         ++PK CA V GTQI VE+LF+N  +R+  L+N+ D++++IV L+ + AI++  VSF  +K G    +VH+    + L  D I ++YG  ++  L                   +  S+  +S+     F M G+ S++NY +KK   +LF+N RLV+   LK  +E VY+   PK + PF+++ ++VPP+++DVN+ PT
Sbjct:  142 KFEDLRSIQSFGFRGEALSSISHVSHLKILTKTADSPCAYRACYLNGKLTPPSPNEQSSDPKPCAGVNGTQITVEDLFFNTPSRKNVLKNTVDEHSRIVLLMKKYAINNPTVSFILKKQGDPTPEVHTSGGQNSLEKDVIGSLYGTDLSKELKIITIDPNNPNPNNDDDDNISGSQIKNSNLNRLDFTMKGFFSSTNYNSKKINFILFINGRLVDSKNLKTGLEQVYSKYLPKGTHPFMFIRLLVPPKNIDVNIHPT 398          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_HALOH (DNA mismatch repair protein mutL OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 77/227 (33.92%), Postives = 127/227 (55.95%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDG-VMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL S+KS+GFRGEALAS+  V  + + + TK      ++  + G V+  EP  C A  GT I+V++LF+N  AR K L+ + +++  I ++++R A+ +  V+F+   +G  R  + +  T   LD I  +YG  +A +LV++   +Y D      K+ GY+S  +Y    ++  + FVN R V  + L R VE  Y    P  + P +++++ + P  VDVNV PT
Sbjct:   86 DLYSLKSLGFRGEALASIASVSILDIISRTKSQTKAIKMRLKGGKVISKEP--CGASVGTDIIVKDLFFNTPARYKYLKTTRNEFKHISNIITREALAYPGVNFTLIHNG--RIVLKTPGTGKTLDCIYAIYGKEMAQSLVKI---DYEDR---YIKVSGYISRPDYYRYNRSYEIFFVNKRAVHNSILNRGVEEAYQGLLPPGAYPVVFLNLKLNPILVDVNVHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOBB (DNA mismatch repair protein mutL OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutL PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 72/230 (31.30%), Postives = 124/230 (53.91%), Query Frame = 2
Query:    2 RKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            ++ ED+ SI ++GFRGEAL S+  V  V + T  +    GY ++   G   +E   C   KGT + V +LF+N+ AR+K L+ +S + + I D+++R+A+ + N+SF    +G  +  +H+    +  D IRT+YG S+  N++      Y + +S +  + GYV         +    +FVN R ++   L  AVE  + +    +  PF  + I + PE++DVN+ PT
Sbjct:   82 KESEDIYSINTLGFRGEALPSIASVARVNLKTKQETEECGYEITIEGGKF-SEVTECGVNKGTIMEVRDLFFNVPARKKFLKTTSKESSLINDIITRIALSNPNISFKLFNNG--KKIIHTYGNGNMKDVIRTIYGKSIVENVL------YFEDTSDIATIYGYVGKEAIARGSRNNQSIFVNSRYIKNRSLGIAVEQAFKSFSTVSKFPFFILFIEIYPEYIDVNIHPT 302          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_CLOAB (DNA mismatch repair protein mutL OS=Clostridium acetobutylicum GN=mutL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:    5 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            K +D+ SI ++GFRGEAL S+  V   T+ + TK +  G  +S   G ++   K C    GT I V +LFYN+ AR K L++++ + + I D+++R+A+ H+ +SF    +G  +  + + AT + +D+IR +YG  +  N++  E   + D    +  + GYV N+      +    +F+N R ++   +  AVE    +       PF  + + + PE VDVNV PT
Sbjct:   82 KLQDIYSINTLGFRGEALPSIASVSKTTLKSRTKENEFGREISISGGSVDYI-KDCGTNIGTHIEVRDLFYNVPAREKFLKSTAKEASSISDIVNRLALAHSEISFRLINNG--KRVITTYATDNLIDTIRAIYGKKICDNVISFE--RHTD----LVSVHGYVGNAEISRGSRNNQSIFINKRYIKNKLITAAVENAVKSFMMINKFPFFIIFLDIFPEFVDVNVHPT 301          
BLAST of CN189431 vs. ExPASy Swiss-Prot
Match: MUTL_STACT (DNA mismatch repair protein mutL OS=Staphylococcus carnosus (strain TM300) GN=mutL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 77/227 (33.92%), Postives = 123/227 (54.19%), Query Frame = 2
Query:   14 DLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMENEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQL--EASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVVPPEHVDVNVPPT 688
            DL  I+++GFRGEALAS++ V  VT+ T T G   G+ +   DG +  E K   A KGT I+VE+LFYN  AR K +++   +  KI D+++RMA+ H NV F+           +    ++ +  +  +YG+ VA +LV +  + S+Y+    +V K +   SN +Y++      +F+N R ++   L +A+   Y         P  Y++I + P  VDVNV PT
Sbjct:   86 DLFHIRTLGFRGEALASISSVAKVTLRTCTDGQ-SGHEIYAEDGAIL-EQKPAKAKKGTDILVESLFYNTPARLKYVKSLYTELGKITDIVNRMAMSHPNVRFTLTSDDKVLIKTNGSGRTNEV--MAEIYGMKVAKDLVHITGDTSDYH-LEGYVAKPEHSRSNRHYIS------IFINGRYIKNFVLNKAIVEGYHTLLTIGRYPICYINIEMDPILVDVNVHPT 301          
The following BLAST results are available for this feature:
BLAST of CN189431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
MLH1_HUMAN8.903e-5846.29DNA mismatch repair protein Mlh1 OS=Homo sapiens G... [more]
MLH1_MOUSE1.983e-5746.70DNA mismatch repair protein Mlh1 OS=Mus musculus G... [more]
MLH1_RAT3.740e-5645.81DNA mismatch repair protein Mlh1 OS=Rattus norvegi... [more]
MLH1_YEAST2.871e-4843.91DNA mismatch repair protein MLH1 OS=Saccharomyces ... [more]
MLH1_SCHPO8.089e-4338.89Putative MutL protein homolog 1 OS=Schizosaccharom... [more]
MLH1_DICDI2.877e-4035.80DNA mismatch repair protein Mlh1 OS=Dictyostelium ... [more]
MUTL_HALOH6.223e-2733.92DNA mismatch repair protein mutL OS=Halothermothri... [more]
MUTL_CLOBB3.088e-2631.30DNA mismatch repair protein mutL OS=Clostridium bo... [more]
MUTL_CLOAB7.607e-2531.44DNA mismatch repair protein mutL OS=Clostridium ac... [more]
MUTL_STACT1.695e-2433.92DNA mismatch repair protein mutL OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189431 ID=CN189431; Name=CN189431; organism=Citrus sinensis; type=EST; length=690bp
GAGGAAGTATGAGGACTTGCAATCAATCAAATCCATGGGTTTCAGAGGAG
AGGCTTTGGCAAGCATGACTTACGTCGGCCATGTTACCGTCACAACCATC
ACTAAAGGCCACTTGCACGGTTACCGGGTTTCATATAGAGATGGTGTCAT
GGAGAATGAACCAAAAGCATGTGCTGCTGTCAAAGGCACGCAGATAATGG
TGGAGAATTTGTTTTACAACATGATTGCTCGAAGGAAGACACTGCAAAAT
TCTTCTGATGATTATACAAAAATTGTTGATTTGCTAAGCCGGATGGCCAT
TCACCACACAAATGTGAGCTTCTCTTGCAGAAAGCACGGAGCTGCTAGAG
CAGATGTTCACTCTATTGCTACATCGTCAAGGCTTGATTCTATCAGAACT
GTATATGGAGTGTCGGTTGCTAGTAATTTAGTGCAGTTAGAAGCTTCAGA
GTACAATGATTCCTCAAGTTTTGTTTTCAAGATGGATGGCTACGTTTCCA
ATTCAAATTATGTGGCAAAGAAAACAACAATGGTGCTTTTTGTCAATGAT
AGGTTGGTTGAGTGTGCTCCTTTAAAGAGAGCTGTAGAAATTGTTTATGC
TGCAACCTTCCCTAAAGCATCAAAACCTTTCATCTATATGTCTATAGTGG
TACCACCTGAGCATGTTGATGTGAATGTGCCACCCACAAA
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