CX286868

Overview
NameCX286868
Unique NameCX286868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.026e-40
Identity = 83/130 (63.85%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  267 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQ--------------------------PERTTGVAFRGRSYRLSD 578
            PN+ I++YGLVTLKAFYLPWAMLALDVIFGSP++PDLLGIIAGHLYYFLTVLHPLATGKN LKTPKWV K+VARWRIGAP  +  Q                          P  ++  AFRGRSYRL+D
Sbjct:  137 PNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVARWRIGAPVASVRQAGGVGAAGPGAGGGVGGGGAYSSARAPPESSNTAFRGRSYRLTD 266          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.563e-35
Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = -3
Query:  270 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIG----APAINRAQPERTTGVAFRGRSYRLS 578
            PN+QINIYG++ LKAFYLPW ML LDVIFGSPL+P LLGI+ GHLYY+  VLHPLATGKN LKTPKWV K+VAR+RIG    AP    A     TG AFRGRSYRL+
Sbjct:  137 PNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTG-AFRGRSYRLN 242          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.661e-34
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -3
Query:  270 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQP--ERTTGVAFRGRSYRLS 578
            PNSQI++YGLV L++FYLPWAML LDVIFGS ++P LLGI+ GH YYFL+VLHPLATGKN LKTP WV K+VAR+RIG  A    +P    T   AFRGRSYRLS
Sbjct:  137 PNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVRPAAANTGSGAFRGRSYRLS 241          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = -3
Query:  270 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVARWRIGAPAINRAQPERT----TGVAFRGRSYRLS 578
            PN+QINIYGLV L++FYLPWAML LDVIFGS L+P LLGI+ GHLYYF  VLHPLATGK+ LKTPKWV K+VAR+RIG  A +  +P       +GV FRGRSYRL+
Sbjct:  137 PNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPANGNSGSGV-FRGRSYRLN 242          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = -3
Query:  363 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 578
            PN  I+  GL T  A YLPW +L +  +F   L  DLLG +AGH YYFL   +PL + + LLKTP +++ L+
Sbjct:  143 PNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLM 214          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  360 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 578
            P   ++  GL T  A YLPW +L   ++ GS    DLLG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:  147 PFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  360 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 578
            P   ++  GL T  A YLPW +L   ++ GS    DLLG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:  147 PFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  360 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 578
            P   ++  GL T  A YLPW +L   ++ GS    DLLG+IAGH+YYFL  ++P  TG+  LKTP +++ L A
Sbjct:  147 PFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFA 219          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  363 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 578
            P  ++N +GL+T +A +LPWA++ L ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL TP +++ L+
Sbjct:  137 PGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLLL 209          
BLAST of CX286868 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  363 PNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 578
            P  ++N +GL+T +A +LPWA++   ++ G+ ++ DLLGI  GH+YYFL  + P    GK LL+TP +++ L+
Sbjct:  137 PRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLL 209          
The following BLAST results are available for this feature:
BLAST of CX286868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DERL1_ARATH2.026e-4063.85Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DER12_MAIZE2.563e-3570.09Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_ORYSJ1.661e-3468.57Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE3.701e-3468.22Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DERL2_DICDI1.787e-1245.83Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_ORYSJ3.981e-1245.21Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE3.981e-1245.21Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE3.981e-1245.21Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL3_BOVIN4.402e-1142.47Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL3_HUMAN5.749e-1141.10Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01002A04Rv Veg1 Citrus clementina cDNA clone C01002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286868 ID=CX286868; Name=CX286868; organism=Citrus clementina; type=EST; length=580bp
AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTAACCACTAAATTACTCTT
GATTAACACAAAATATTTGCATCGACAATCTTGATGTTAAAAGTTTTTTT
TTCCCCTCTACAAATCAATTTTTTGGTGAAGCAATAGTATCCAACAATCT
GTAAAATGTGAAAATGAAACTTCTTGAACTGTCAGCTCTTCTGGGTTGAA
GGCTTTGCTGCCTTTGTCAGGTGCATCACCTGGAAAAATTACAAGAACGT
TGCCATATTATAATCAATCGCTTAAACGATATGATCTTCCTCTGAAAGCC
ACACCAGTTGTCCTTTCAGGCTGGGCACGATTGATAGCTGGAGCTCCGAT
TCTCCACCTCGCCACCAGTTTTTGTACCCATTTTGGAGTCTTCAACAAGT
TCTTTCCAGTTGCAAGTGGATGTAAGACAGTCAAAAAGTAATACAGATGT
CCTGCTATGATTCCCAGCAGGTCTGGTACAAGGGGTGAACCAAAAATGAC
GTCCAAAGCAAGCATAGCCCATGGTAGATAAAATGCCTTAAGTGTCACGA
GGCCATATATATTGATCTGAGAATTTGGGA
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