CX286937

Overview
NameCX286937
Unique NameCX286937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286937_ssr2 microsatellite CX286937_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9419 contig Ccv1_Contig9419:283..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286937 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1
Query:   61 CFLSGFVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSH-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVDGQPL--YEDYEN 600
            C  + F    R +    N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+  + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV+++G  L  ++ ++N
Sbjct:   58 CGFASFCDKHRAATH--NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKVLEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQN 241          
BLAST of CX286937 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  121 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK---IRANSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDGQPL 582
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+   +     F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V+G+PL
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL 226          
BLAST of CX286937 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   85 ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANST---FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSHWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVDG 573
            A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+           CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++PW+V++G
Sbjct:  127 AGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING 290          
The following BLAST results are available for this feature:
BLAST of CX286937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YVRI_CAEEL2.476e-1831.91GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
GILT_HUMAN4.223e-1835.85Gamma-interferon-inducible lysosomal thiol reducta... [more]
YKJ2_CAEEL1.076e-1328.40GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionC01002G05Rv Veg1 Citrus clementina cDNA clone C01002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286937 ID=CX286937; Name=CX286937; organism=Citrus clementina; type=EST; length=611bp
GCTTCTTCTTCTTATTCCTCAACAAAAGCCTTATCTCTTGTCTTTTACAT
TACCTTGTTCTGCTTCTTGTCTGGCTTTGTTTCAGCTTCTAGAACTTCAC
CTTCAGATGTCAACAGTAAAGTCAAGTTAGGTCTGTACTACGAGTCTTTG
TGTCCATACAGTGCCAATTTCATTATCAATTACTTGGTTAAAATCTTTGA
AGATGTTGATCTGTTATCCATCGTTGATCTCCATCTTTCTCCCTGGGGGA
ATGCCAAAATCAGAGCCAACAGCACCTTTGATTGCCAGCATGGCCCTTCT
GAATGCTTGCTGAACACTGTGGAAGCTTGTGCGATTGATAGTTGGCCTGA
ATTGAACAAGCATTTCCCGTTTATCTACTGCATTGAGAGTTTAGTGTACG
AGCATAAGTATTCTCACTGGGAAACATGCTTTGATAAATTGGAACTGGAT
CCGAAGCCAATTGTTGATTGCTATACCAGTGGATATGGAACACAGCTTGA
GTTAAAATATGCAGCTGAGACAAATTCCCTTGTGCCTCCTCATCAATATG
TGCCTTGGGTTGTTGTGGATGGACAGCCACTGTATGAGGACTACGAAAAT
TTTGTAAGCTA
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