CX288757

Overview
NameCX288757
Unique NameCX288757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4782 contig Ccv1_Contig4782:524..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.283e-23
Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++AIK VK NA A FDETVEAH RL I P+ T+  +R T+ LPHG  + VR                         L+E I S G++D +   +T   MP++ K+ ++L   GLMPNPK GTVT D+A A+ E K G ++F+ D
Sbjct:   23 LEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQTVRIAVITRGEKVAEAKAAGAELAGDEDLVETI-SKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            S K E R +   ++A+  +K NA A FDET+EAH+RL I P+ T+  +R T+ LPHG  ++++                         L+E I + G +D +   +T   MP++ K+ ++L   GLMPNPK GTVTND+A A++E K G ++F+ D
Sbjct:   12 STKIEDR-IYPPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A+  VKANA A FDET+EAHVRL I P+ T+  +R T+ LP G  +++R                        +L++ IA  G++D +   +T   MP++ K+ ++L   GLMPNPK GTVT DV  A+ E K G ++F+ D
Sbjct:   23 LEAVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDSIAG-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A+  +K NA A FDET+EAH+RL I P+ T+  +R T+ LPHG  ++++                         L+E I + G ++ +   +T   MP++ K+ ++L   GLMPNPK GTVTND+A A++E K G ++F+ D
Sbjct:   23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A+  +K NA A FDET+EAH+RL I P+ T+  +R T+ LPHG  ++++                         L+E I + G ++ +   +T   MP++ K+ ++L   GLMPNPK GTVTND+A A++E K G ++F+ D
Sbjct:   23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            ++A+  +K NA A FDET+EAH+RL I P+ T+  +R T+ LPHG  +++R                         L+E I + G ++ +   +T   MP++ K+ ++L   GLMPNPK GTVTND+  A++E K G ++F+ D
Sbjct:   23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANATD (50S ribosomal protein L1 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22
Identity = 59/156 (37.82%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +K  +   + D  +AI+     + A FDETVE HVRL + PR  +  VRGT+ LP+G  K+VR                        +L+ +I + G  D + C +T   M  + ++ KIL   GLMPNPK GTVT DVA+AV+EAK G ++F++D
Sbjct:   11 AKLVDKTKLYDPEEAIELALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGKSVRVLVFAKGDKAKEAEEAGADYVGAEELVAKIQNEGWTDFDVCIATPDMMGLVGRLGKILGPKGLMPNPKSGTVTMDVAKAVKEAKAGRVEFRLD 166          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            S K E R    L +A+  +K NA A FDET+EAH+RL I P+ T+  +R T+ LPHG  ++++                         L+E I + G +D +   +T   MP++ K+ ++L   GLMPNPK GTVT+D+A A++E K G ++F+ D
Sbjct:   12 STKIEDRTYAPL-EALAIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRAD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_KINRD (50S ribosomal protein L1 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            +DA+K  +  +   +D TVE   RL + PRK + +VRGT+NLPHG  K  R                        +LI+E+A  G+LD +   +T   M ++ ++ K+L   GLMPNPK GTVT DVA+AV E K G I+F+ D
Sbjct:   23 LDAVKLARETSTVKYDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVGDRAAQAEAAGADIVGGDELIDEVAK-GRLDFDAAVATPDLMGKVGRLGKVLGPRGLMPNPKTGTVTMDVAKAVSEIKGGKIEFRTD 165          
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AGRT5 (50S ribosomal protein L1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534
            L DAI  VK  A A FDETVE  + L + PR  + +VRG +NLP+G  + VR                        +L+E I   GK+D ++C +T   MP + ++ K+L   G+MPNPK GTVT DVA AV+ +K G ++F+++
Sbjct:   23 LTDAISMVKERAVAKFDETVEVSMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGVKADEATAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166          
The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SYNPW3.283e-2340.9750S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM94.288e-2336.5450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNR31.629e-2238.1950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM01.629e-2236.1150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMS2.128e-2236.1150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM22.128e-2236.1150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_ANATD2.128e-2237.8250S ribosomal protein L1 OS=Anaerocellum thermophi... [more]
RL1_PROM52.779e-2236.5450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_KINRD3.630e-2238.8950S ribosomal protein L1 OS=Kineococcus radiotoler... [more]
RL1_AGRT53.630e-2238.6250S ribosomal protein L1 OS=Agrobacterium tumefaci... [more]

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Properties
Property NameValue
Genbank descriptionC02004A12SK IF1 Citrus clementina cDNA clone C02004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bp
CTGCAGGAATTCGCACGAGGGCAGGCGCAGGTGTCTGTCCCCTACCCACT
GTTGATTAAGCCGGAGAGTAAGAAGAAAGAGAGCAGACCGGTTCTTGATT
TGATGGACGCCATCAAACAAGTCAAGGCCAATGCCAAGGCTACATTTGAT
GAAACTGTTGAAGCTCATGTACGATTGGCCATTCCTCCTCGCAAAACTGA
GCTGATAGTTCGTGGTACTATGAATCTTCCGCATGGTGATAAGAAGGCCG
TCAGGGTGGCTTTCTTTGCTGAAGGGGCTGATGCGGAAGAAGCCAGAGCT
GCTGGAGCTGATGTTGTTGGTGGTTTAAAACTTATTGAGGAAATTGCAAG
CAGTGGCAAGCTTGATGTTGAGAAATGCTTCTCAACGCGTCAATTCATGC
CTCGTCTGTTCAAGATATCAAAGATTCTTAATCAACATGGTTTGATGCCA
AATCCTAAACAAGGTACAGTAACCAATGACGTTGCTAGAGCGGTACAAGA
AGCAAAACAGGGTCACATTAAATTTAAAATGGATAACA
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